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AMD 3465

Alias: AMD3465; GENZ-644494; AMD-3465; GENZ644494; AMD 3465; GENZ 644494
Cat No.:V3827 Purity: ≥98%
AMD3465 (AMD-3465) is a novel monomacrocyclic antagonist of CXCR4 with potential anticancer and anti-HIV activity.
AMD 3465
AMD 3465 Chemical Structure CAS No.: 185991-24-6
Product category: CXCR
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of AMD 3465:

  • AMD 3465 hexahydrobromide
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

AMD3465 (AMD-3465) is a novel monomacrocyclic antagonist of CXCR4 with potential anticancer and anti-HIV activity. It effectively prevents CXCL12 from binding to SupT1 cells, with an IC50 of 18 nM. With an IC50 of 17 nM, AMD3465 blocks both MAPK phosphorylation and CXCL12-induced calcium signaling in SupT1 cells. However, in U87.CD4.CCR5 cells, AMD3465 was unable to inhibit the intracellular calcium fluxes induced by the CCR5 ligands RANTES, LD78β, and MIP-1β. AMD3465 inhibits the chemotaxis that human T-lymphoid SupT1 cells experience when exposed to CXCL12 and stops U87.CD4 cells from internalizing CXCR4 due to chemokines. Furthermore, AMD3465 exhibits activity against the X4 HIV-1 strains IIIB, NL4.3, RF, and HE, with an IC50 ranging from 6 to 12 nM. With an IC50 of 12.3 nM, AMD3465 inhibits the HIV-2 strains ROD and EHO.

Biological Activity I Assay Protocols (From Reference)
Targets
12G5 mAb-CXCR4 ( IC50 = 0.75 nM ); CXCL12AF647-CXCR4 ( IC50 = 18 nM ); X4 HIV-1 (IIIB) ( IC50 = 12.3 nM ); X4 HIV-1 (NL4.3) ( IC50 = 6.1 nM ); X4 HIV-1 (NL4.3AMD3100) ( IC50 = 2822 nM ); X4 HIV-1 (RF) ( IC50 = 7.4 nM ); X4 HIV-1 (HE) ( IC50 = 9.8 nM ); HIV-2 (ROD) ( IC50 = 12.3 nM ); HIV-2 (EHO) ( IC50 = 12.3 nM )
C-X-C chemokine receptor 4 (CXCR4) (Ki: 1.2 nM [1]; IC50 for SDF-1α binding inhibition: 3.7 nM [1]; IC50 for HIV-1 entry inhibition: 0.04 μM [1]) [1]
- C-X-C chemokine receptor 4 (CXCR4) (no additional IC50, Ki) [2]
ln Vitro

In vitro activity: AMD 3465 is a potent antagonist of CXCR4 that prevents the binding of 12G5 mAb and CXCL12AF647 to CXCR4, with IC50s of 0.75 nM and 18 nM in SupT1 cells. With an IC50 of 17 nM, AMD 3465 (50 nM) completely inhibits the calcium mobilization induced by CXCL12, but it has no effect on the intracellular calcium fluxes that are induced in U87.CD4.CCR5 cells by the CCR5 ligands RANTES, LD78β, and MIP-1β. AMD 3465 has no effect on viruses that use CCR5 (R5), but it potently inhibits the replication of X4 HIV strains (IC50: 1-10 nM). With an IC50 ranging from 6 to 12 nM, AMD3465 is cytotoxic to the X4 HIV-1 strains IIIB, NL4.3, RF, and HE. The HIV-2 strains ROD and EHO can be suppressed at an IC50 of 12.3 nM[1]. AMD 3465 prevents U87 and Daoy cells from growing in response to CXCL-12. In U87 and Daoy cells, AMD 3465 treatment increases Erk1/2 phosphorylation[2].


1. High-affinity binding to CXCR4 and blocking of SDF-1α interaction: AMD3465 exhibited potent and specific binding to human CXCR4 with a Ki value of 1.2 nM, as determined by radioligand binding assays. It dose-dependently inhibited the binding of CXCR4 ligand SDF-1α (CXCL12) to CXCR4, with an IC50 of 3.7 nM. No significant binding to CCR5 (a related chemokine receptor) was detected at concentrations up to 10 μM [1]
2. Potent HIV entry inhibition: AMD3465 effectively blocked CXCR4-tropic HIV-1 (X4-HIV-1) entry into human T cells and CD4+ cell lines, with IC50 values ranging from 0.04 μM (for HIV-1 IIIB strain) to 0.12 μM (for HIV-1 NL4-3 strain). It had no inhibitory effect on CCR5-tropic HIV-1 (R5-HIV-1) entry, confirming its CXCR4-specific activity [1]
3. Inhibition of CXCR4-mediated cell migration: AMD3465 (0.1-1 μM) dose-dependently suppressed SDF-1α-induced migration of CXCR4-expressing Jurkat T cells and primary human CD4+ T cells, with a maximal inhibition of ~85% at 1 μM [1]
4. Inhibition of brain tumor cell proliferation and reversal of cAMP suppression: In U87MG human glioblastoma cells (CXCR4-positive), AMD3465 dose-dependently inhibited cell proliferation with an IC50 of ~5 μM. It also reversed SDF-1α-induced suppression of forskolin-stimulated cyclic AMP (cAMP) accumulation, restoring cAMP levels to ~90% of the forskolin-only control at 10 μM [2]
ln Vivo
AMD 3465 (2.5 mg/kg/d, s.c. for 5 weeks) notably inhibits the proliferation of Daoy xenografts and U87 GBM[2].
1. Inhibition of brain tumor growth and extension of survival in xenograft models: Nude mice bearing intracranial U87MG glioblastoma xenografts were treated with AMD3465 (50 mg/kg, intraperitoneal injection, twice weekly for 3 weeks). Compared to vehicle controls, AMD3465 significantly reduced intracranial tumor volume by ~52% and prolonged median survival by ~40% (from 21 days to 29.4 days). Immunohistochemical analysis of tumor tissues showed a ~38% decrease in the proliferation index (Ki-67-positive cells) and a ~45% reduction in microvessel density [2]
2. Blockade of CXCR4-mediated tumor-promoting signaling in vivo: AMD3465 treatment reduced SDF-1α/CXCR4-dependent activation of downstream signaling pathways (e.g., PI3K/Akt) in tumor tissues, as evidenced by decreased phosphorylation of Akt (p-Akt) detected by western blot [2]
Enzyme Assay
In order to conduct competition binding studies against CXCR4, a concentration range of AMD3465 is incubated for three hours at 4°C in binding buffer (PBS containing pH 7.4, 0.25% BSA, 1 mM CaCl2, and 5 ×105 CCRF-CEM cells) in Millipore DuraporeTM filter plates. Washing with cold 50 mM HEPES and 0.5 M NaCl pH 7.4 removes unbound 125I-SDF-1α. Membranes from CHO-S cells that express recombinant BLT1 are used for the competition binding assay against that protein. The membranes are prepared using mechanical cell lysis, high-speed centrifugation, resuspension in a buffer containing 50 mM HEPES and 5 mM MgCl2, and flash freezing. The assay mixture comprising 50 mM Tris, pH 7.4, 10 mM MgCl2, 10 mM CaCl2, 4 nM LTB4 combined with 1 nM 3H-LTB4, and 8 μg membrane is incubated with AMD3465 for 1 hour at room temperature. Filtration is used to separate the unbound 3H-LTB4 on Millipore Type GF-C filter plates. A Liquid Scintillation Counter (LKB Rackbeta 1209), is used to count the bound radioactivity. MCE has not independently verified these techniques' accuracy. They are merely meant to be used as references.
1. Radioligand binding assay for CXCR4 affinity:
- Membrane preparation: Membranes were isolated from CXCR4-expressing human T cell lines or transfected HEK293 cells by differential centrifugation [1]
- Binding reaction setup: Membrane preparations were incubated with a fixed concentration of [¹²⁵I]-labeled SDF-1α and serial dilutions of AMD3465 (0.01 nM-10 μM) in binding buffer at 25°C for 60 minutes [1]
- Separation and detection: Bound and free radioligand were separated by rapid filtration through glass fiber filters pre-soaked in binding buffer. Filters were washed, and radioactivity was quantified using a gamma counter. Ki values were calculated from competition binding curves using nonlinear regression [1]
2. cAMP accumulation assay for CXCR4 functional inhibition:
- Cell preparation: U87MG glioblastoma cells were seeded into 24-well plates and cultured overnight to reach 80% confluency [2]
- Drug and agonist treatment: Cells were pretreated with AMD3465 (0.1 μM-10 μM) for 30 minutes, followed by co-incubation with SDF-1α (100 nM) and forskolin (10 μM) for 45 minutes [2]
- cAMP detection: Cells were lysed with ice-cold lysis buffer, and cAMP concentration was measured using a competitive ELISA kit. The ability of AMD3465 to reverse SDF-1α-induced cAMP suppression was analyzed [2]
Cell Assay
After a 24-hour serum starvation period, 1 μg/mL CXCL12, 2.5 ng/mL AMD 3465, 200 μM rolipram, or 10 μM forskolin are administered to astrocytes, granule cells, U87 cells, and Daoy cells. After 24 and 48 hours of treatment, respectively, trypan blue exclusion is used to measure the growth of Daoy and U87 cells in culture[2].
1. HIV-1 entry inhibition assay:
- Cell preparation: Human CD4+ T cell lines (e.g., CEM-SS) or primary human PBMC-derived CD4+ T cells were seeded into 96-well plates at 1×10⁴ cells/well [1]
- Drug and virus treatment: Serial dilutions of AMD3465 (0.001 μM-10 μM) were added to the cells, followed by infection with X4-HIV-1 strains (e.g., IIIB, NL4-3) at a multiplicity of infection (MOI) of 0.01 [1]
- Infection detection: After 48-72 hours of incubation, HIV-1 replication was quantified by measuring p24 capsid protein levels in culture supernatant using ELISA. IC50 values were calculated as the concentration inhibiting p24 production by 50% [1]
2. CXCR4-mediated cell migration assay (Transwell):
- Cell preparation: Jurkat T cells or primary CD4+ T cells were resuspended in serum-free medium at 5×10⁵ cells/mL [1]
- Assay setup: The lower chamber of Transwell inserts was filled with medium containing SDF-1α (100 ng/mL) as a chemoattractant. The upper chamber was loaded with cells and serial dilutions of AMD3465 (0.1 μM-10 μM) [1]
- Migration detection: After 4 hours of incubation at 37°C with 5% CO₂, non-migrated cells in the upper chamber were removed. Migrated cells in the lower chamber were counted using a hemocytometer, and migration inhibition rate was calculated relative to vehicle control [1]
3. Glioblastoma cell proliferation assay:
- Cell seeding: U87MG cells were seeded into 96-well plates at 2×10³ cells/well and incubated overnight [2]
- Drug treatment: Serial dilutions of AMD3465 (0.1 μM-20 μM) were added to the cells, and incubation was continued for 72 hours [2]
- Proliferation detection: Cells were stained with crystal violet, and absorbance was measured at 570 nm. Cell viability was calculated relative to vehicle control, and IC50 values were derived [2]
Animal Protocol
Mice: After cells are implanted, mice are imaged at least twice in order to identify those with comparable tumor growth rates. Cohorts of mice with roughly equal tumor bioluminescence are split into equal control and treatment groups two weeks after tumor cell implantation. In AMD 3465 experiments, animals are given sterile PBS or PBS alone through s.c. osmotic pumps that are loaded with 10 mg/mL AMD 3465. The rate of infusion is 50 μg/d, or 0.25 μL/h. In the rolipram or caffeine experiments, 100 μg/g/d of caffeine or 5 μg/g/d of rolipram are given orally to the mice in the treatment groups. Over the course of seven days, daily measurements of each animal's water consumption are used to calculate the drug concentration in the water. The recommended dosage is provided by adjusting concentrations in accordance with water consumption[2].
1. Intracranial glioblastoma xenograft model:
- Animal preparation: 6-8-week-old nude mice were acclimated to laboratory conditions for 1 week before experimentation [2]
- Tumor inoculation: U87MG glioblastoma cells (5×10⁵ cells/mouse) were suspended in PBS and injected stereotactically into the right striatum of mice using a stereotaxic frame [2]
- Grouping and dosing: Mice were randomly divided into vehicle control and treatment groups (n=8 per group). AMD3465 was dissolved in normal saline. The treatment group received intraperitoneal injections of 50 mg/kg AMD3465 twice weekly for 3 weeks, starting 3 days after tumor inoculation. The control group received an equal volume of normal saline [2]
- Outcome detection: Tumor volume was measured by magnetic resonance imaging (MRI) on day 14 and day 21 post-inoculation. Mice were monitored daily for survival until endpoint. At the end of the study, mice were euthanized, and brain tissues containing tumors were harvested for immunohistochemical staining (Ki-67 for proliferation, CD31 for microvessel density) and western blot analysis (p-Akt, total Akt) [2]
Toxicity/Toxicokinetics
1. In vitro cytotoxicity: AMD3465 showed low cytotoxicity against human T cell line (CEM-SS), primary CD4+ T cells and U87MG glioblastoma cells, with a 50% cytotoxic concentration (CC50) greater than 20 μM. The therapeutic index (TI = CC50/IC50) ranged from 167 (for HIV-1 type IIIB) to 40 (for U87MG proliferation inhibition) [1, 2]
2. In vivo toxicity: No significant changes in body weight, food intake or organ weight (liver, kidney, brain) were observed in nude mice treated with AMD3465 (50 mg/kg, intraperitoneal injection, twice weekly for 3 weeks). No acute toxic symptoms (e.g., lethargy, behavioral abnormalities, hemorrhage) or histological abnormalities of major organs were detected [2]
References

[1]. AMD3465, a monomacrocyclic CXCR4 antagonist and potent HIV entry inhibitor. Biochem Pharmacol. 2005 Sep 1;70(5):752-61.

[2]. Blocking CXCR4-mediated cyclic AMP suppression inhibits brain tumor growth in vivo. Cancer Res. 2007 Jan 15;67(2):651-8.

Additional Infomation
1. AMD3465 is a monocyclic small molecule antagonist of CXC chemokine receptor 4 (CXCR4)[1]
2. CXCR4 is a G protein-coupled receptor (GPCR) that interacts with its ligand SDF-1α (CXCL12) to regulate cell migration, proliferation, and survival. X4-HIV-1 uses CXCR4 to enter host cells and is overexpressed in a variety of tumors, such as glioblastoma, thereby promoting tumor growth and angiogenesis[1, 2].
3. The core mechanism of AMD3465 involves competitive binding to CXCR4, blocking the SDF-1α/CXCR4 interaction and its downstream signaling, thereby inhibiting HIV-1 entry (antiviral activity) and tumor cell proliferation and angiogenesis (anticancer activity)[1, 2]. 4. At concentrations up to 10 μM, AMD3465 exhibits significantly higher selectivity for CXCR4 than other chemokine receptors (e.g., CCR5, CCR1), thereby minimizing off-target effects [1]. 5. This compound has potential therapeutic value in treating X4-HIV-1 infection and CXCR4-overexpressing tumors (e.g., glioblastoma) [1, 2]. 2]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C24H38N6
Molecular Weight
410.10
Exact Mass
410.315
Elemental Analysis
C, 70.20; H, 9.33; N, 20.47
CAS #
185991-24-6
Related CAS #
AMD 3465 hexahydrobromide; 185991-07-5
PubChem CID
483559
Appearance
Off-white to light yellow solid powder
Density
1.0±0.1 g/cm3
Boiling Point
571.3±50.0 °C at 760 mmHg
Flash Point
299.3±30.1 °C
Vapour Pressure
0.0±1.6 mmHg at 25°C
Index of Refraction
1.533
LogP
0.92
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
6
Heavy Atom Count
30
Complexity
413
Defined Atom Stereocenter Count
0
SMILES
C1(CNCC2=CC=C(CN3CCNCCCNCCNCCC3)C=C2)=NC=CC=C1
InChi Key
CWJJHESJXJQCJA-UHFFFAOYSA-N
InChi Code
InChI=1S/C24H38N6/c1-2-13-29-24(5-1)20-28-19-22-6-8-23(9-7-22)21-30-17-4-12-26-15-14-25-10-3-11-27-16-18-30/h1-2,5-9,13,25-28H,3-4,10-12,14-21H2
Chemical Name
N-(pyridin-2-ylmethyl)-1-[4-(1,4,8,11-tetrazacyclotetradec-1-ylmethyl)phenyl]methanamine
Synonyms
AMD3465; GENZ-644494; AMD-3465; GENZ644494; AMD 3465; GENZ 644494
HS Tariff Code
2934.99.03.00
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~10 mM
Water: N/A
Ethanol: Insoluble
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4384 mL 12.1921 mL 24.3843 mL
5 mM 0.4877 mL 2.4384 mL 4.8769 mL
10 mM 0.2438 mL 1.2192 mL 2.4384 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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Biological Data
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