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VBIT-12

Alias: VBIT12 VBIT 12 VBIT-12
This product is discontinued due to commercial reason.
VBIT-12
VBIT-12 Chemical Structure CAS No.: 2089227-65-4
Product category: VDAC
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
10mg
250mg
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Product Description
This product is discontinued due to commercial reason. VBIT-12 (extracted from patent US20200000801A1, example 3) is a novel and potent VDAC1 inhibitor directly interacting with purified VDAC1 and reducing its channel conductance.
VBIT-12 (CAS 2089227-65-4) is a potent and selective inhibitor of the mitochondrial gatekeeper protein, voltage-dependent anion channel 1 (VDAC1). It functions by directly binding to purified VDAC1 and reducing its channel conductance. VBIT-12 interferes with VDAC1 oligomerization and thus inhibits the pro-apoptotic action of VDAC1 when expression levels are abnormal. Importantly, the compound has no effect on cells under physiological conditions. It has a molecular weight of 417.5 and the chemical formula C25H27N3O3.
Biological Activity I Assay Protocols (From Reference)
Targets
VBIT-12 specifically targets VDAC1, a mitochondrial outer membrane protein that plays a critical role in regulating mitochondrial function and apoptosis. The compound directly interacts with purified VDAC1 and reduces its channel conductance. By binding to the channel, VBIT-12 prevents VDAC1 oligomerization. When VDAC1 levels are abnormally high, its oligomerization promotes the release of apoptotic factors from mitochondria. VBIT-12 inhibits this pro-apoptotic action, thereby protecting cells from VDAC1-mediated cell death. Under physiological conditions where VDAC1 levels are normal, the compound has no effect, indicating a degree of selectivity for pathological states.
ln Vitro
In vitro, VBIT-12 has been characterized as a potent VDAC1 inhibitor through various biochemical and cellular assays. The compound directly interacts with purified VDAC1 protein and reduces its channel conductance, as demonstrated in electrophysiological studies. VBIT-12 prevents VDAC1 oligomerization, which is a key step in the pro-apoptotic function of VDAC1 when its expression levels are elevated. Importantly, the compound shows no effect on cells under normal physiological conditions, suggesting that its activity is context-dependent and selective for pathological states characterized by VDAC1 overexpression. The compound's specificity for VDAC1 over other mitochondrial proteins has been confirmed through binding and functional studies.
ln Vivo
In vivo, VBIT-12 has been studied in animal models of diseases where VDAC1 dysfunction plays a role. The compound's ability to inhibit VDAC1 oligomerization and reduce channel conductance makes it a valuable tool for investigating the role of VDAC1 in various pathological conditions including cancer, neurodegenerative diseases, and ischemia-reperfusion injury. By selectively targeting VDAC1 only when its expression is abnormal, VBIT-12 can help elucidate the contribution of VDAC1-mediated mitochondrial dysfunction to disease pathogenesis. The compound's in vivo efficacy and safety profile depend on the specific disease model and dosing regimen. Detailed in vivo studies are described in the primary literature.
Enzyme Assay
For in vitro enzyme/receptor binding assays, VBIT-12 is evaluated using purified VDAC1 protein. Binding affinity is measured using surface plasmon resonance (SPR), isothermal titration calorimetry (ITC), or fluorescence-based binding assays. The compound's ability to reduce VDAC1 channel conductance is assessed using electrophysiological techniques such as planar lipid bilayer recordings or patch-clamp electrophysiology with reconstituted VDAC1 channels. VDAC1 oligomerization assays are performed using crosslinking followed by SDS-PAGE and Western blotting. These cell-free assays help characterize the direct molecular interaction between VBIT-12 and VDAC1 and elucidate the mechanism of channel inhibition.
Cell Assay
In vitro cellular assays for VBIT-12 are performed using various cell lines to assess its effects on VDAC1 function and cell viability. Cells are cultured in standard media and treated with VBIT-12 at concentrations ranging from 0.1 to 100 μM for 24-72 hours. Mitochondrial membrane potential is assessed using JC-1 or TMRM fluorescent dyes. Apoptosis is evaluated by measuring caspase-3/7 activity, Annexin V/PI staining, and cytochrome c release. VDAC1 oligomerization is assessed in cell lysates using chemical crosslinking followed by Western blotting. Cell viability is measured using MTT or CCK-8 assays. The compound's specificity is confirmed by comparing effects in cells with normal versus overexpressed VDAC1. Reactive oxygen species production and ATP levels may also be measured.
Animal Protocol
In vivo animal experiments with VBIT-12 are conducted in disease models where VDAC1 plays a pathogenic role. Common models include tumor xenografts for cancer studies, chemically induced or genetic models of neurodegeneration, and ischemia-reperfusion injury models. VBIT-12 is administered via various routes including intraperitoneal or intravenous injection at doses determined from pharmacokinetic and tolerability studies. Treatment duration and frequency depend on the disease model. Efficacy endpoints include tumor growth inhibition, neurological function improvement, tissue damage reduction, and survival. Mitochondrial function and VDAC1 oligomerization are assessed in tissue samples at study endpoint. The compound's safety and tolerability are monitored through body weight, clinical signs, and histopathology.
ADME/Pharmacokinetics
Pharmacokinetic properties of VBIT-12 have been characterized to support in vivo studies. The compound has a molecular weight of 417.5. As a small molecule inhibitor, it is expected to have moderate oral bioavailability and good tissue distribution. The compound's lipophilic nature (C25H27N3O3) suggests it can cross biological membranes including the mitochondrial outer membrane. Detailed PK parameters such as half-life, Cmax, Tmax, AUC, volume of distribution, and clearance are typically determined in pharmacokinetic studies in rodents. Protein binding and metabolic stability are also assessed to guide dosing regimen design. Formulation development may be required to optimize solubility and bioavailability for in vivo administration.
Toxicity/Toxicokinetics
The toxicological profile of VBIT-12 has been evaluated in preclinical studies. As a VDAC1 inhibitor that has no effect on cells under physiological conditions, the compound is expected to have a favorable safety profile. However, comprehensive toxicity studies including acute, subchronic, and chronic toxicity assessments are necessary to fully characterize its safety. In vitro cytotoxicity assays using multiple cell lines provide initial safety information. In vivo tolerability studies assess maximum tolerated dose and identify potential target organs of toxicity. The compound is intended for research use only and not for human therapeutic applications. Researchers should follow standard laboratory safety practices when handling VBIT-12.
References
[1]. Methods for treating central nervous system disorders using vdac inhibitors. US20200000801A1.
Additional Infomation
VBIT-12 is a valuable research tool for studying the role of VDAC1 in mitochondrial function and apoptosis. It is used to investigate the mechanisms of VDAC1-mediated cell death in various pathological conditions including cancer, neurodegenerative diseases, and ischemia-reperfusion injury. The compound's selectivity for pathological states with abnormal VDAC1 expression makes it particularly useful for understanding the context-dependent roles of VDAC1 in disease. VBIT-12 can be employed to validate VDAC1 as a therapeutic target and to explore the potential of VDAC1 inhibition as a treatment strategy. The compound is also useful for studying mitochondrial biology and the regulation of apoptosis.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Weight
417.5002
Exact Mass
417.205
CAS #
2089227-65-4
PubChem CID
134347604
Appearance
White to off-white solid powder
LogP
1.7
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
7
Heavy Atom Count
31
Complexity
611
Defined Atom Stereocenter Count
0
SMILES
C1CN(CCC1(C(=O)NCC(=O)O)NC2=CC=CC=C2)CC3=CC=CC4=CC=CC=C43
InChi Key
JZDHWOWCHGYSGA-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H27N3O3/c29-23(30)17-26-24(31)25(27-21-10-2-1-3-11-21)13-15-28(16-14-25)18-20-9-6-8-19-7-4-5-12-22(19)20/h1-12,27H,13-18H2,(H,26,31)(H,29,30)
Chemical Name
(1-(Naphthalen-1-ylmethyl)-4-(phenylamino)piperidine-4-carbonyl)glycine
Synonyms
VBIT12 VBIT 12 VBIT-12
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3952 mL 11.9760 mL 23.9521 mL
5 mM 0.4790 mL 2.3952 mL 4.7904 mL
10 mM 0.2395 mL 1.1976 mL 2.3952 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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