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Sudan Black B

Alias: CI-26150 CI26150 CI26150 Sudan Black B
Cat No.:V49903 Purity: ≥98%
Sudan Black B is a diazo-based dye/coloring agent used to assess myelin repair in demyelinating diseases.
Sudan Black B
Sudan Black B Chemical Structure CAS No.: 4197-25-5
Product category: New11
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Sudan Black B is a diazo-based dye/coloring agent used to assess myelin repair in demyelinating diseases. It is fat-soluble and can be used as a histochemical stain for staining of neutral triglycerides and lipids.
Sudan Black B (CAS#: 4197-25-5) is a basic black dye used for staining triglycerides, lipids, and lipoproteins in histology and cell biology. It has a molecular formula of C29H24N6 and a molecular weight of 456.54. Sudan Black B is considered a most sensitive and specific reagent for lipid staining. It is used to stain lipids in tissue samples and cell cultures, and is often used in studies of lipid metabolism, fat storage, and neurobiology.
Biological Activity I Assay Protocols (From Reference)
Targets
Sudan Black B does not have a specific molecular target but functions as a lipophilic dye that stains neutral lipids and phospholipids in biological samples. The dye binds to lipid droplets, cell membranes, and myelin sheaths, allowing for the visualization of lipid-rich structures in tissues and cells. Its staining mechanism is based on its high affinity for hydrophobic lipid environments, where it partitions and becomes visible due to its intense black color. This makes it a valuable tool for identifying lipid deposits and differentiating between tissue components in histological studies.
ln Vitro
Sudan Black B can be utilized in conjunction with SA-β-gal for researching aging because it is also appropriate for freezing materials. Sudan Black B is a very lipophilic reagent with a strong affinity for lipofuscin's lipid compartment. The B-lipofuscin response to Sudan black is positive. Blue-black intracellular particles can be observed under a light microscope in frozen tissues and cells, and brown-black particles in FFPE tissues.
In vitro, Sudan Black B is used as a histological stain for the detection of lipids in tissue sections, cell smears, and frozen sections. It is particularly useful for staining lipids in cell cultures and tissue samples. The dye is also used to stain older blood or bone marrow smears, though the stain slightly fades over time. Its staining intensity is concentration-dependent, with optimal staining typically achieved using a saturated solution in 70% ethanol. Sudan Black B is considered a sensitive and specific reagent for lipid staining. It is often used in studies of lipid metabolism, fat storage, and neurobiology.
ln Vivo
In vivo, Sudan Black B is not used as a therapeutic agent but as a research tool in histology and cell biology. It is used in ex vivo studies on tissue samples to identify lipid deposits and study lipid metabolism. The compound is not administered to live animals for therapeutic purposes. Its in vivo applications are limited to post-mortem tissue staining and histological analysis. The compound is for research use only and is not approved for human therapeutic applications.
Enzyme Assay
The in vitro lipid staining protocol for Sudan Black B typically involves fixing tissue sections or cell smears, followed by incubation with a saturated solution of Sudan Black B in 70% ethanol or other suitable solvent. The staining time varies from 5 to 30 minutes depending on the sample type. After staining, the samples are rinsed with 70% ethanol to remove excess dye and counterstained with other stains if needed. The stained lipids appear black or dark blue under bright-field microscopy. For specificity testing, lipid extraction controls (e.g., using organic solvents) are performed to confirm that the staining is lipid-specific. Positive controls (e.g., known lipid-rich tissues) and negative controls (lipid-extracted samples) are included in each staining run.
Cell Assay
For in vitro cellular assays, cells or tissue sections are stained with Sudan Black B using standard histological protocols. Cells are fixed with formalin or other fixatives, stained with Sudan Black B solution, and examined by light microscopy. Lipid content is quantified by image analysis or by measuring the absorbance of extracted dye. Cell viability is not typically assessed with Sudan Black B, as it is a staining reagent rather than a pharmacologically active compound. For lipid metabolism studies, cells are treated with compounds that modulate lipid accumulation (e.g., fatty acids, inhibitors) and then stained with Sudan Black B to assess changes in lipid content. All experiments include appropriate controls (untreated cells, lipid-extracted samples) and are performed in triplicate.
Animal Protocol
For in vivo studies, Sudan Black B is not typically administered to animals as a therapeutic agent. It is used in ex vivo studies on tissue samples obtained from animals. Tissues are harvested, fixed, sectioned, and stained with Sudan Black B for histological analysis. The staining is used to identify lipid deposits, assess lipid metabolism, and study neurobiology. All animal procedures should be conducted in accordance with institutional guidelines.
ADME/Pharmacokinetics
The pharmacokinetic properties of Sudan Black B are not relevant, as it is a histological stain rather than a therapeutic agent. The compound has a molecular weight of 456.54 and is a lipophilic dye. It is used in vitro and ex vivo for staining applications. The compound should be stored in a cool, dry place protected from light. Detailed PK data are not available in publicly accessible literature.
Toxicity/Toxicokinetics
The toxicology of Sudan Black B has been partially characterized. As a histological dye, it is not intended for human consumption or therapeutic use. In handling, the compound may cause staining of skin and clothing. Inhalation of dust may cause respiratory irritation. The compound is not genotoxic in standard in vitro assays. Sudan Black B should be handled with appropriate laboratory safety precautions, including the use of personal protective equipment. The compound is for research use only and is not approved for human therapeutic use.
References

[1]. Sudan Black B, The Specific Histochemical Stain for Lipofuscin: A Novel Method to Detect Senescent Cells. Methods Mol Biol. 2017;1534:111-119.

Additional Infomation
Sudan Black B belongs to the pyrimidine class of compounds. Its chemical name is 2,2-dimethyl-2,3-dihydro-1H-pyrimidine, with a [4-(phenyldiazonyl)naphth-1-yl]diazonyl substituent at the 6-position. It is a lipid-soluble dye, mainly used for staining triglycerides in frozen sections and protein-bound lipids in paraffin sections. It is a histological dye. Sudan Black B belongs to the azobenzene class of compounds, is a bis(azo) compound, and also belongs to the pyrimidine class of compounds.
Sudan Black B is a basic black dye used for staining lipids in histology and cell biology. It is considered a sensitive and specific reagent for lipid staining. The compound is not approved for human use and is intended for research purposes only. It is available as a high-purity research reagent for laboratory use. Its lipophilic staining properties make it a valuable tool for studying lipid metabolism, fat storage, neurobiology, and tissue differentiation.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C29H24N6
Molecular Weight
456.54
Exact Mass
456.206
CAS #
4197-25-5
PubChem CID
61336
Appearance
Brown to black solid powder
Density
1.3±0.1 g/cm3
Boiling Point
726.0±60.0 °C at 760 mmHg
Melting Point
120-124 °C(lit.)
Flash Point
392.9±32.9 °C
Vapour Pressure
0.0±2.4 mmHg at 25°C
Index of Refraction
1.702
LogP
7.51
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
4
Heavy Atom Count
35
Complexity
773
Defined Atom Stereocenter Count
0
InChi Key
YCUVUDODLRLVIC-VPHDGDOJSA-N
InChi Code
InChI=1S/C29H24N6/c1-29(2)30-26-14-8-13-22-25(17-18-27(31-29)28(22)26)35-34-24-16-15-23(20-11-6-7-12-21(20)24)33-32-19-9-4-3-5-10-19/h3-18,30-31H,1-2H3/b33-32+,35-34+
Chemical Name
2,3-Dihydro-2,2-dimethyl-6-((1-naphthyl-4-(phenylazo))azo)-1H-perimidine
Synonyms
CI-26150 CI26150 CI26150 Sudan Black B
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~1 mg/mL (~2.19 mM)
H2O : < 0.1 mg/mL
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1904 mL 10.9519 mL 21.9039 mL
5 mM 0.4381 mL 2.1904 mL 4.3808 mL
10 mM 0.2190 mL 1.0952 mL 2.1904 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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