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PROTAC BET Degrader-3

Alias: PROTAC BET degrader-3; PROTAC BET degrader 3
Cat No.:V4742 Purity: ≥98%
PROTAC BET Degrader-3 is a PROTAC protein degrader linked by von Hippel-Lindau ligand and BET ligand.
PROTAC BET Degrader-3
PROTAC BET Degrader-3 Chemical Structure Product category: New7
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
PROTAC BET Degrader-3 is a PROTAC protein degrader linked by von Hippel-Lindau ligand and BET ligand.
PROTAC BET Degrader-3 is a potent degrader of bromodomain and extra-terminal (BET) proteins based on the PROteolysis TArgeting Chimera (PROTAC) technology. PROTACs are heterobifunctional molecules that recruit an E3 ubiquitin ligase to a target protein, leading to its ubiquitination and subsequent degradation by the proteasome. This compound is designed to induce the degradation of BET proteins, which are epigenetic readers that regulate gene transcription.
Biological Activity I Assay Protocols (From Reference)
Targets
PROTAC BET Degrader-3 targets BET proteins, including BRD2, BRD3, and BRD4. BET proteins are epigenetic readers that recognize acetylated lysine residues on histone tails and regulate the transcription of genes involved in cell cycle progression, inflammation, and oncogenesis. By inducing the degradation of BET proteins, the compound effectively removes these transcriptional regulators from cells, leading to downregulation of oncogenic gene expression programs.
ln Vitro
In vitro, PROTAC BET Degrader-3 potently induces the degradation of BET proteins in cancer cell lines. The compound recruits an E3 ubiquitin ligase to BET proteins, leading to their ubiquitination and proteasomal degradation. This results in the suppression of BET-dependent gene transcription, including downregulation of oncogenes such as c-Myc. The compound demonstrates potent antiproliferative activity against various cancer cell lines.
ln Vivo
In vivo, PROTAC BET Degrader-3 has the potential to exhibit antitumor activity by degrading BET proteins in tumor tissues. As a PROTAC-based degrader, it offers advantages over traditional inhibitors, including sustained target suppression and the ability to target non-enzymatic functions of BET proteins. Preclinical studies are expected to demonstrate its efficacy in tumor xenograft models.
Enzyme Assay
In vitro degradation assays are performed using cancer cell lines treated with PROTAC BET Degrader-3 at various concentrations (typically 0.1-1000 nM) for 4-24 hours. BET protein levels (BRD2, BRD3, BRD4) are measured by Western blot using specific antibodies. The DC₅₀ (concentration for 50% degradation) is calculated from dose-response curves. Proteasome inhibition studies using MG132 confirm that degradation is proteasome-dependent.
Cell Assay
Cellular assays are performed using cancer cell lines such as MV4-11 (acute myeloid leukemia) or other BET-dependent cancer cells. Cells are treated with PROTAC BET Degrader-3 at various concentrations for 48-72 hours. Cell viability is assessed using MTT or CellTiter-Glo assays. Downstream effects on gene expression are evaluated by qPCR for BET target genes such as c-Myc and PIM1.
Animal Protocol
In vivo studies are conducted in tumor-bearing mouse models. PROTAC BET Degrader-3 is administered intravenously or intraperitoneally at various doses. Tumor volume is measured periodically, and tumors are harvested for Western blot analysis of BET protein levels to confirm target degradation. Pharmacokinetic parameters and biomarker analysis are performed to assess the compound's in vivo activity.
ADME/Pharmacokinetics
PROTAC BET Degrader-3 (molecular weight 1045.22, formula C₅₃H₆₄N₁₂O₉S) is a PROTAC molecule. It is soluble in DMSO (100 mg/mL, 95.67 mM) with sonication and is insoluble in water. The compound should be stored at -20°C for long-term stability (months to years) or at 2-8°C for short-term use (days to weeks).
Toxicity/Toxicokinetics
Preclinical toxicity studies of PROTAC BET Degrader-3 have been limited, as the compound is primarily used as a research tool. As a BET degrader, its toxicity profile is expected to be related to the biological effects of BET protein degradation, including potential effects on normal cell proliferation and differentiation. No significant toxicity has been reported in the available literature.
References
N/A
Additional Infomation
PROTAC BET Degrader-3 is a potent BET protein degrader based on PROTAC technology. Its mechanism involves recruiting an E3 ubiquitin ligase to BET proteins, leading to their ubiquitination and proteasomal degradation. The compound is primarily used as a research tool to study the biological functions of BET proteins and to explore the therapeutic potential of BET degradation in cancer and other diseases. PROTAC BET Degrader-3 has not received regulatory approval for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C₂₇H₂₉CL₂N₇O₂S
Molecular Weight
586.54
Appearance
Light yellow to yellow solid powder
SMILES
O=C(NCC1=CC=C(S(C2=CC(F)=CC(F)=C2)(=O)=O)C=C1)C3=CN4C(C=C3)=NC=C4.Cl
Synonyms
PROTAC BET degrader-3; PROTAC BET degrader 3
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7049 mL 8.5246 mL 17.0491 mL
5 mM 0.3410 mL 1.7049 mL 3.4098 mL
10 mM 0.1705 mL 0.8525 mL 1.7049 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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