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Sorafenib N-oxide

Alias: Sorafenib N-oxide
Sorafenib N-oxide is the active metabolite of sorafenib.
Sorafenib N-oxide
Sorafenib N-oxide Chemical Structure CAS No.: 583840-03-3
Product category: Cytochrome P450
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
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Product Description
Sorafenib N-oxide is the active metabolite of sorafenib. Sorafenib N-oxide is a linear mixed inhibitor of microsomal CYP3A4 with Ki of 15 μM.
Sorafenib N-oxide (Sorafenib N-Oxide, CAS 583840-03-3) is the major active metabolite of the multi-kinase inhibitor sorafenib (BAY 43-9006). Sorafenib is an FDA-approved drug for the treatment of advanced renal cell carcinoma (RCC), unresectable hepatocellular carcinoma (HCC), and radioactive iodine-resistant advanced thyroid carcinoma. Sorafenib N-oxide is formed by the metabolic oxidation of the pyridine nitrogen in the sorafenib molecule, primarily by cytochrome P450 (CYP) 3A4 enzymes, and contributes to the overall pharmacological activity of the parent drug.
Biological Activity I Assay Protocols (From Reference)
Targets
CYP3A4 15 μM (Ki)
Raf kinases (C-Raf, B-Raf), vascular endothelial growth factor receptors (VEGFR-1, VEGFR-2, VEGFR-3), platelet-derived growth factor receptor (PDGFR-beta), c-Kit, FLT3, and RET. Sorafenib N-oxide is a linear-mixed inhibitor of microsomal CYP3A4, with a Ki of 15 uM, but this is not its primary anti-cancer target. As a metabolite of sorafenib, it retains the multi-kinase inhibitory activity of the parent drug, targeting the same set of kinases involved in tumor cell proliferation and angiogenesis.
ln Vitro
Sorafenib N-oxide is an active metabolite that contributes to the pharmacological activity of sorafenib. It is a potent inhibitor of several kinases. Specifically, it inhibits FLT3 that contains the internal tandem duplication mutation (FLT3-ITD) with a Kd of 70 nM, and it inhibits the proliferation of MV4-11 acute myeloid leukemia (AML) cells expressing FLT3-ITD with an IC50 of 25.8 nM. It also inhibits CYP3A4 activity with a Ki of 15 uM, indicating potential for drug-drug interactions when administered with other CYP3A4 substrates. As a metabolite, it is not typically tested as a standalone drug in cell-free assays for Raf or VEGFR activity; the parent sorafenib is the primary test compound.
ln Vivo
Sorafenib N-oxide is not administered to animals as a standalone test article, as it is a metabolite of sorafenib. Its in vivo effects are studied as part of the overall pharmacological and toxicological profile of the parent drug sorafenib. In animal models of cancer (e.g., xenograft models of RCC or HCC), oral administration of sorafenib results in the in vivo generation of sorafenib N-oxide, which circulates at concentrations comparable to or even higher than the parent drug in some species (e.g., in humans, the AUC of sorafenib N-oxide is 5-10% of that of the parent compound). The metabolite contributes to the anti-tumor efficacy and to the side effects (e.g., hypertension, diarrhea, hand-foot skin reaction) seen with sorafenib treatment.
Enzyme Assay
The inhibitory activity of sorafenib N-oxide against CYP3A4 is measured in a standard in vitro CYP inhibition assay. Human liver microsomes (0.25 mg/mL protein) are incubated with a CYP3A4-specific probe substrate (e.g., 50 uM midazolam) in the presence of varying concentrations of sorafenib N-oxide (0-100 uM) in 100 mM potassium phosphate buffer (pH 7.4) at 37degC for 10 min. The reaction is initiated by adding an NADPH-regenerating system. After termination by adding cold acetonitrile containing an internal standard, the metabolite (1'-hydroxymidazolam) is quantified by LC-MS/MS. The Ki value is determined by Dixon plot analysis.
Cell Assay
Sorafenib N-oxide is not typically tested in cell-based assays as a standalone compound for anti-cancer activity. However, in a proliferation assay, MV4-11 AML cells (which express the FLT3-ITD mutation) are seeded in 96-well plates and treated with sorafenib N-oxide (0.1-1000 nM) for 72 hours. Cell viability is measured by the CellTiter-Glo luminescent assay. The IC50 for inhibition of cell proliferation is calculated using a non-linear regression model.
Animal Protocol
Sorafenib N-oxide is not administered to animals as a standalone test article. To study the contribution of sorafenib N-oxide to the in vivo activity of sorafenib, researchers have developed rat models where sorafenib N-oxide is administered directly (e.g., by intravenous or intraperitoneal injection) and its concentration in plasma and tissues is compared to that of the parent sorafenib. In typical efficacy studies, mice bearing tumor xenografts (e.g., HepG2 liver cancer xenografts) are treated with sorafenib (30-100 mg/kg, oral gavage, once daily) for 2-4 weeks. At study termination, plasma and tumor homogenates are analyzed by LC-MS/MS to quantify the concentrations of sorafenib and sorafenib N-oxide.
ADME/Pharmacokinetics
Not applicable for the metabolite alone. For the parent drug sorafenib, the pharmacokinetics are well-characterized: sorafenib has an oral bioavailability of 40-50% in humans, a long terminal half-life (approximately 25-48 hours), high plasma protein binding (99.5%), and a large volume of distribution. Sorafenib N-oxide is the major circulating metabolite in humans, with an area under the curve (AUC) that is 5-10% of the parent drug. It has a longer elimination half-life than the parent drug (approx. 30-50 hours) and is primarily excreted in the feces.
Toxicity/Toxicokinetics
The toxicity of sorafenib N-oxide is best characterized as part of the safety profile of sorafenib. Sorafenib is toxic to the gastrointestinal tract (causing diarrhea, nausea, vomiting), skin (hand-foot skin reaction, rash, alopecia), and cardiovascular system (hypertension, bleeding, cardiac ischemia). It is also hepatotoxic. Sorafenib N-oxide is believed to contribute to the CYP3A4-mediated drug-drug interaction potential of sorafenib, as it is a linear-mixed inhibitor of CYP3A4 (Ki = 15 uM). This can increase the plasma concentrations of other drugs metabolized by CYP3A4, increasing their toxicity.
References

[1]. Quantitation of sorafenib and its active metabolite sorafenib N-oxide in human plasma by liquid chromatography-tandem mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci. 2010 Nov 1;878(29):3033-8.

[2]. Sorafenib N-Oxide Is an Inhibitor of Human Hepatic CYP3A4. AAPS J. 2019 Jan 9;21(2):15.

Additional Infomation
Sorafenib N-oxide is not approved as a drug itself, but the parent drug, sorafenib (Nexavar®), is an FDA-approved medication. Sorafenib is a first-line treatment for advanced renal cell carcinoma, hepatocellular carcinoma, and radioactive iodine-resistant advanced thyroid carcinoma. Sorafenib N-oxide is an active metabolite that circulates in patients taking sorafenib and contributes to the overall anti-cancer efficacy and side effect profile. As a research chemical, sorafenib N-oxide can be used as an analytical reference standard for pharmacokinetic studies and as a tool to investigate the metabolism and drug-drug interaction potential of sorafenib.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H16CLF3N4O4
Molecular Weight
480.82
Exact Mass
480.081
CAS #
583840-03-3
PubChem CID
9826472
Appearance
Typically exists as solids at room temperature
Density
1.455g/cm3
Boiling Point
591.655ºC at 760 mmHg
Melting Point
220-222ºC
Flash Point
311.622ºC
Index of Refraction
1.601
LogP
6.12
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
5
Heavy Atom Count
33
Complexity
678
Defined Atom Stereocenter Count
0
SMILES
CNC(=O)C1=[N+](C=CC(=C1)OC2=CC=C(C=C2)NC(=O)NC3=CC(=C(C=C3)Cl)C(F)(F)F)[O-]
InChi Key
BQAZCCVUZDIZDC-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H16ClF3N4O4/c1-26-19(30)18-11-15(8-9-29(18)32)33-14-5-2-12(3-6-14)27-20(31)28-13-4-7-17(22)16(10-13)21(23,24)25/h2-11H,1H3,(H,26,30)(H2,27,28,31)
Chemical Name
4-[4-[[4-chloro-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]-N-methyl-1-oxidopyridin-1-ium-2-carboxamide
Synonyms
Sorafenib N-oxide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0798 mL 10.3989 mL 20.7978 mL
5 mM 0.4160 mL 2.0798 mL 4.1596 mL
10 mM 0.2080 mL 1.0399 mL 2.0798 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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