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Bestatin methyl ester

Alias: Bestatin-amido-Me; 339186-54-8; (2S)-2-[[(2S,3R)-3-amino-2-hydroxy-4-phenylbutanoyl]amino]-N,4-dimethylpentanamide; (S)-2-((2S,3R)-3-Amino-2-hydroxy-4-phenylbutanamido)-N,4-dimethylpentanamide; orb1987800;
Cat No.:V87296 Purity: ≥98%
Bestatin methyl ester is a cell-permeable inhibitor of Zn2+-binding aminopeptidases.
Bestatin methyl ester
Bestatin methyl ester Chemical Structure CAS No.: 65322-89-6
Product category: Aminopeptidase
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes
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Product Description
Bestatin methyl ester is a cell-permeable inhibitor of Zn2+-binding aminopeptidases. Bestatin methyl ester inhibits spore cell differentiation.
Bestatin methyl ester (also known as AG-L-65032) is a cell-permeable derivative of Bestatin with improved lipophilicity and cellular membrane penetration through esterification modification. As a Zn²⁺-binding aminopeptidase inhibitor, this compound retains the activity of the parent drug while exhibiting slightly stronger inhibition of neutral aminopeptidase than Bestatin, but significantly weaker activity against basic aminopeptidase.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of Bestatin methyl ester is intracellular neutral aminopeptidase, where it acts as a competitive inhibitor by binding to the Zn²⁺ ion in the enzyme active site. Compared to Bestatin, the methyl ester modification results in significantly reduced inhibitory activity against basic aminopeptidase, indicating improved target selectivity for this derivative. Additionally, this compound promotes the degradation of cIAP1 protein.
ln Vitro
Bestatin methyl ester (600, 900 µM; 24 h) inhibits spore cell differentiation in Dictyostelium discoideum [1].
Bestatin methyl ester exhibits biological activity in various in vitro models. In HT-1080 cells, it promotes cIAP1 degradation with an IC₅₀ value of 0.69 μM; in MV4-11 cells, the cytotoxicity IC₅₀ after 24-hour treatment is 3.9 μM. Regarding apoptosis regulation, Bestatin methyl ester potentiates the growth-inhibitory effects of the agonistic anti-Fas antibody CH11 more efficiently than Bestatin, suggesting that intracellular neutral aminopeptidase plays an important role in death ligand-induced apoptosis in solid tumor cells. Furthermore, at concentrations of 600-900 μM for 24 hours, this compound inhibits spore cell differentiation in Dictyostelium discoideum.
ln Vivo
Based on studies of Bestatin, aminopeptidase inhibitors exhibit analgesic activity in animal models, with Bestatin showing an ED₅₀ of 240 μg following intracerebroventricular administration in mice. As a lipophilic derivative of Bestatin, Bestatin methyl ester theoretically possesses better tissue distribution properties, but specific data on its in vivo anti-tumor efficacy and pharmacodynamics require further investigation.
Enzyme Assay
Enzyme activity is assessed using recombinant human neutral aminopeptidase and fluorogenic substrates such as Leu-AMC or Ala-AMC. Bestatin methyl ester is diluted to various concentrations in reaction buffer (e.g., 50 mM HEPES, pH 7.4, containing 100 μM ZnCl₂) and pre-incubated with the enzyme at 37°C for 10-15 minutes, followed by substrate addition to initiate the reaction. Fluorescence signals (excitation 360-380 nm, emission 440-460 nm) are continuously monitored using a fluorescence microplate reader. The inhibition rate is calculated, and IC₅₀ values are obtained by non-linear regression fitting.
Cell Assay
Exponentially growing human tumor cells (e.g., HT-1080 fibrosarcoma cells or MV4-11 leukemia cells) are seeded into 96-well culture plates at appropriate densities. After overnight attachment, cells are treated with various concentrations of Bestatin methyl ester (e.g., 0.01-100 μM) for 24-72 hours. Cell viability is assessed using CellTiter-Glo luminescent assay or MTT assay with absorbance measured at 570 nm. For cIAP1 degradation assays, cells are harvested after 3 hours of treatment, and cIAP1 protein levels are detected by Western blot analysis.
Animal Protocol
Referring to the in vivo protocol of Bestatin, 6-8-week-old female mice can be used to establish tumor-bearing models. When tumor volumes reach approximately 100 mm³, Bestatin methyl ester is administered orally or intraperitoneally. Dosing regimens can be based on Bestatin protocols, with once-daily administration for 2-3 consecutive weeks. Tumor volume and body weight are measured 2-3 times per week to calculate the tumor inhibition rate. At the end of the experiment, tumor tissues are collected for immunohistochemistry or Western blot analysis.
ADME/Pharmacokinetics
As a lipophilic prodrug of Bestatin, Bestatin methyl ester exhibits improved lipophilicity and cellular membrane penetration through methyl ester modification. Regarding erythrocyte uptake, the methyl ester derivative can cross cell membranes more effectively due to its reduced polarity. Upon entry into cells, the methyl ester bond is likely hydrolyzed by intracellular esterases to generate the active form for inhibitory activity. Specific pharmacokinetic parameters such as plasma half-life, bioavailability, and metabolic pathways require further experimental determination.
Toxicity/Toxicokinetics
Toxicological data on Bestatin methyl ester are currently limited. Based on the clinical safety profile of its parent compound Bestatin, Bestatin is generally well-tolerated at conventional doses. As a cell-permeable derivative, the toxicity profile of Bestatin methyl ester may be similar to that of Bestatin, but due to its improved cellular penetration, potential off-target effects warrant attention. In in vitro cytotoxicity assays, this compound exhibits an IC₅₀ of 3.9 μM at 24 hours in MV4-11 cells, indicating cytotoxicity at higher concentrations. This product is explicitly intended for research use only and is not for human therapeutic use.
References

[1]. Bestatin inhibits cell growth, cell division, and spore cell differentiation in Dictyostelium discoideum. Eukaryot Cell. 2012 Apr;11(4):545-57.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H26N2O4
Molecular Weight
322.40
Exact Mass
322.189
CAS #
65322-89-6
PubChem CID
9927170
Appearance
Off-white to light brown oitment
LogP
2.161
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
9
Heavy Atom Count
23
Complexity
381
Defined Atom Stereocenter Count
3
SMILES
CC(C)C[C@@H](C(=O)OC)NC(=O)[C@H]([C@@H](CC1=CC=CC=C1)N)O
InChi Key
WGNKTWBIPBOGLO-ILXRZTDVSA-N
InChi Code
InChI=1S/C17H26N2O4/c1-11(2)9-14(17(22)23-3)19-16(21)15(20)13(18)10-12-7-5-4-6-8-12/h4-8,11,13-15,20H,9-10,18H2,1-3H3,(H,19,21)/t13-,14+,15+/m1/s1
Chemical Name
methyl (2S)-2-[[(2S,3R)-3-amino-2-hydroxy-4-phenylbutanoyl]amino]-4-methylpentanoate
Synonyms
Bestatin-amido-Me; 339186-54-8; (2S)-2-[[(2S,3R)-3-amino-2-hydroxy-4-phenylbutanoyl]amino]-N,4-dimethylpentanamide; (S)-2-((2S,3R)-3-Amino-2-hydroxy-4-phenylbutanamido)-N,4-dimethylpentanamide; orb1987800;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.1017 mL 15.5087 mL 31.0174 mL
5 mM 0.6203 mL 3.1017 mL 6.2035 mL
10 mM 0.3102 mL 1.5509 mL 3.1017 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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