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BAY-5094

Cat No.:V85378 Purity: ≥98%
BAY-5094
BAY-5094 Chemical Structure CAS No.: 2891706-78-6
Product category: PPAR
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
Official Supplier of:
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Product Description
BAY-5094 is a PPAR gamma (PPARG) inverse agonist. BAY-5094 is orally active. BAY-5094 can be used in the study of intraluminal bladder cancer.
BAY-5094 (CAS 2891706-78-6) is an orally active, covalent inverse agonist of PPAR gamma (PPARG) developed for the research of luminal bladder cancer. It has a molecular formula of C24H20ClF3N2O3 and a molecular weight of 476.88 g/mol. The compound was discovered through a structure-based drug design campaign, representing a first-in-class covalent approach to targeting PPARG. BAY-5094 is intended for research use only and is not approved for human therapeutic applications.
Biological Activity I Assay Protocols (From Reference)
Targets
PPAR-γ
BAY-5094 targets PPAR gamma (PPARG), a member of the nuclear receptor superfamily that functions as a transcription factor regulating lipid metabolism, adipocyte differentiation, and insulin sensitivity. As a covalent inverse agonist, BAY-5094 binds irreversibly to PPARG and stabilizes the receptor in an inactive conformation, thereby suppressing PPARG-mediated transcriptional activity. PPARG is a clinically validated target for metabolic diseases, and its modulation is being explored in oncology, particularly in luminal bladder cancer where PPARG signaling plays a pathogenic role.
ln Vitro
BAY-5094 shows potent in vitro activity as a covalent PPARG inverse agonist. The compound effectively suppresses PPARG-mediated transcriptional activity in cell-based reporter assays. As a covalent inhibitor, BAY-5094 forms an irreversible bond with its target, resulting in sustained inhibition of PPARG function. The compound has been characterized in biochemical and cellular assays as part of the discovery campaign.
ln Vivo
In vivo activity of BAY-5094 has been demonstrated in preclinical models of luminal bladder cancer. As an orally active compound, BAY-5094 is suitable for convenient administration via oral gavage. The compound's oral bioavailability and covalent mechanism of action support its potential for research applications in oncology, particularly for tumors driven by PPARG signaling.
Enzyme Assay
Non-cell-based binding assays for BAY-5094 typically involve measuring the affinity and covalent binding of the compound to PPARG using biochemical techniques. A standard protocol includes surface plasmon resonance (SPR) or radioligand binding assays using purified PPARG protein. The covalent nature of the interaction can be assessed by pre-incubation of the compound with the protein followed by washout experiments to confirm irreversible binding. IC50 or Kd values are calculated from dose-response curves.
Cell Assay
Cellular assays for BAY-5094 typically involve luminal bladder cancer cell lines or reporter cell lines expressing PPARG. A representative protocol includes culturing cells in appropriate medium, treating with BAY-5094 at various concentrations (0.001–100 μM) for 24–72 hours, and assessing PPARG transcriptional activity using luciferase reporter assays. Cell viability is assessed using MTT or CellTiter-Glo assays to evaluate antiproliferative effects. Target engagement can be confirmed by measuring expression of PPARG target genes by qRT-PCR.
Animal Protocol
In vivo animal studies with BAY-5094 are conducted in xenograft mouse models of luminal bladder cancer. A typical protocol involves subcutaneous implantation of tumor cells in immunodeficient mice, allowing tumors to reach a certain size, administering BAY-5094 via oral gavage at doses determined from pharmacokinetic studies, monitoring tumor growth and body weight, and harvesting tumors for analysis of PPARG target gene expression and pathway modulation.
ADME/Pharmacokinetics
Pharmacokinetic properties of BAY-5094 have been characterized for oral administration. The compound is orally active, supporting convenient administration. BAY-5094 has a molecular weight of 476.88 g/mol. The compound is soluble in DMSO and is stored as a powder at -20°C for long-term stability. Standard PK parameters including half-life, Cmax, and AUC can be determined from plasma concentration-time profiles following oral administration.
Toxicity/Toxicokinetics
As a research compound, BAY-5094 is not intended for human therapeutic use, and comprehensive toxicological data are limited to preclinical studies. Standard safety assessments would include cytotoxicity screening, hERG channel inhibition testing, and preliminary toxicology studies in animal models to determine maximum tolerated dose and identify potential target organs of toxicity.
References

[1].Discovery and characterization of orally bioavailable 4-chloro-6-fluoroisophthalamides as covalent PPARG inverse-agonists. Bioorg Med Chem. 2023.

Additional Infomation
BAY-5094 (CAS 2891706-78-6) is a first-in-class covalent PPARG inverse agonist with oral activity, developed for the research of luminal bladder cancer. The compound is referenced in the primary literature (Bioorganic & Medicinal Chemistry, 2023) for its discovery and characterization as an orally bioavailable covalent PPARG inverse-agonist. BAY-5094 represents a novel approach to targeting PPARG in oncology research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
CAS #
2891706-78-6
Appearance
White to off-white solid powder
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
Typically soluble in DMSO (e.g. 10 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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