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Pyridoxal 5'-phosphate hydrate (Pyridoxal phosphate hydrate)

Cat No.:V82021 Purity: ≥98%
Pyridoxal 5'-phosphate hydrate is an endogenously produced metabolite.
Pyridoxal 5'-phosphate hydrate (Pyridoxal phosphate hydrate)
Pyridoxal 5'-phosphate hydrate (Pyridoxal phosphate hydrate) Chemical Structure CAS No.: 853645-22-4
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes

Other Forms of Pyridoxal 5'-phosphate hydrate (Pyridoxal phosphate hydrate):

  • Pyridoxal 5'-phosphate monohydrate
  • Pyridoxal Phosphate-d3 (Pyridoxal 5'-phosphate-d3)
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Product Description
Pyridoxal 5'-phosphate hydrate is an endogenously produced metabolite.
Biological Activity I Assay Protocols (From Reference)
Additional Infomation
Pyridoxal phosphate is a monophosphate ester obtained by the condensation of phosphate and the primary hydroxyl group of pyridoxal. It is a coenzyme and a metabolite in humans, E. coli, Saccharomyces cerevisiae, and mice. It is also an inhibitor and cofactor of EC 2.7.7.7 (DNA-directed DNA polymerase). It is a vitamin B6 phosphate ester, belonging to the methylpyridine, monohydroxypyridine, and pyridinecarboxaldehyde classes. Functionally, it is related to pyridoxal. It is the conjugate acid of pyridoxal phosphate (2-). It is the active form of vitamin B6 and participates as a coenzyme in the synthesis of amino acids, neurotransmitters (serotonin, norepinephrine), sphingolipids, and aminolevulinic acid. During amino acid transamination, pyridoxal phosphate is transiently converted to pyridoxamine phosphate (pyridoxamine). Medicare's MC-1 drug is a cardioprotective agent designed to reduce damage to the heart during arterial blockage and arterial reopening after bypass surgery. Pyridoxal phosphate is present in or produced by E. coli (K12 strain, MG1655 strain).
Pyridoxal phosphate has been reported to exist in Arabidopsis thaliana, humans, and other organisms with relevant data.
Pyridoxal phosphate is the active form of vitamin B6 and a coenzyme for many pyridoxal phosphate (PLP)-dependent enzymes. PLP participates in various enzymatic transamination, decarboxylation, and deamination reactions; pyridoxal-5'-phosphate is essential for the synthesis of amino acids and their metabolites, and also participates in the synthesis and/or catabolism of certain neurotransmitters, including the conversion of glutamate to γ-aminobutyric acid (GABA) and the conversion of levodopa to dopamine. In vitamin B6 deficiency, pyridoxal-5'-phosphate can be used as a dietary supplement. Decreased levels of pyridoxal-5'-phosphate in the brain can lead to neurological dysfunction.
Pyridoxal-5'-phosphate is a metabolite found or produced in Saccharomyces cerevisiae.
It is the active form of vitamin B6 and acts as a coenzyme in the synthesis of amino acids, neurotransmitters (serotonin, norepinephrine), sphingolipids, and aminolevulinic acid. During amino acid transamination, pyridoxal phosphate is temporarily converted to pyridoxamine phosphate (pyridoxamine). See also: Pyridoxal (note moved to). Pharmacological Indications: For nutritional supplementation and treatment of dietary deficiencies or imbalances. It has been investigated for the treatment of coronary artery disease. Mechanism of Action: Pyridoxal phosphate is a coenzyme in many enzymatic reactions. It is the active form of vitamin B6 and consists of three natural organic compounds: pyridoxal, pyridoxamine, and pyridoxine. Pyridoxal phosphate acts as a coenzyme in all transamination reactions, as well as in the oxidation and deamination of certain amino acids. The aldehyde group of pyridoxal phosphate forms a Schiff base bond with the ε-amino group of a specific lysine residue on an aminotransferase. The α-amino group of the amino acid substrate replaces the ε-amino group of the lysine residue at the active site. The resulting imine is deprotonated to form a quinone intermediate, which subsequently accepts protons at different positions to form a ketoimine. After hydrolysis of the ketoimine, the amino group remains on the protein complex. MC-1 is a biologically active natural product and can be considered a chemical entity that has been evolutionarily selected and validated to bind to specific protein domains. Therefore, its potential structural framework or backbone has been biologically proven to be safe and effective, providing strong guiding principles for the development of new drugs and compound libraries.
Pharmacodynamics
The two main forms of vitamin B6 are pyridoxine and pyridoxamine. In the liver, they are converted to pyridoxal phosphate (PLP), which is a cofactor in many reactions in amino acid metabolism. PLP is also essential for the enzymatic reaction that controls the release of glucose from glycogen. Pyrrolidine is one of the potential causes of vitamin B6 deficiency.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C8H10NO6P
Molecular Weight
247.14
Exact Mass
247.024
CAS #
853645-22-4
Related CAS #
Pyridoxal 5'-phosphate monohydrate;41468-25-1;Pyridoxal Phosphate-d3;1354560-58-9
PubChem CID
1051
Appearance
Light yellow to yellow solid powder
Density
1.6±0.1 g/cm3
Boiling Point
565.7±60.0 °C at 760 mmHg
Melting Point
140-143ºC
Flash Point
296.0±32.9 °C
Vapour Pressure
0.0±1.6 mmHg at 25°C
Index of Refraction
1.641
LogP
-0.52
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
4
Heavy Atom Count
16
Complexity
292
Defined Atom Stereocenter Count
0
InChi Key
NGVDGCNFYWLIFO-UHFFFAOYSA-N
InChi Code
InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
Chemical Name
(4-formyl-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.0463 mL 20.2314 mL 40.4629 mL
5 mM 0.8093 mL 4.0463 mL 8.0926 mL
10 mM 0.4046 mL 2.0231 mL 4.0463 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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