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Pomalidomide-5-C12-NH2 hydrochloride

Cat No.:V76612 Purity: ≥98%
Pomalidomide-5-C12-NH2 HCl is a Pomalidomide-based E3 ubiquitin ligase cereblon (CRBN) ligand used to recruit cereblon proteins.
Pomalidomide-5-C12-NH2 hydrochloride
Pomalidomide-5-C12-NH2 hydrochloride Chemical Structure Product category: Ligands for E3 Ligase
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
Other Sizes
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Product Description
Pomalidomide-5-C12-NH2 HCl is a Pomalidomide-based E3 ubiquitin ligase cereblon (CRBN) ligand used to recruit cereblon proteins. Pomalidomide-5-C12-NH2 HCl can be connected to protein ligands through a linker to form PROTAC.
Pomalidomide-5-C12-NH2 hydrochloride is a Pomalidomide-based, functionalized ligand designed for E3 ubiquitin ligase cereblon (CRBN). It is a derivative of the immunomodulatory drug Pomalidomide, featuring a C12 alkyl chain terminating in a primary amine (-NH2). This functional group allows it to be conjugated via a linker to a protein-targeting ligand, enabling the synthesis of PROTACs (proteolysis-targeting chimeras).
Biological Activity I Assay Protocols (From Reference)
Targets
Pomalidomide-5-C12-NH2 hydrochloride targets the E3 ubiquitin ligase cereblon (CRBN) by binding to it via its Pomalidomide moiety. It is a CRBN ligand that facilitates the recruitment of the CRBN protein. It is a Pomalidomide-derived cereblon (CRBN) ligand. This compound is a valuable building block for the development of selective degraders in oncology.
ln Vitro
The primary in vitro activity of Pomalidomide-5-C12-NH2 hydrochloride is its ability to bind to the E3 ubiquitin ligase cereblon (CRBN). It is a Pomalidomide-derived cereblon ligand. It can be conjugated to a protein-targeting ligand via a linker to create a PROTAC. The resulting PROTAC can then induce the ubiquitination and degradation of the target protein.
ln Vivo
Pomalidomide-5-C12-NH2 hydrochloride is a building block for PROTACs, which are used in vivo to degrade target proteins. By recruiting CRBN, a PROTAC containing this ligand can lead to the targeted degradation of an oncogenic protein in an animal model. It is a valuable intermediate for developing selective degraders in oncology.
Enzyme Assay
A cell-free binding assay for Pomalidomide-5-C12-NH2 hydrochloride would involve SPR or a TR-FRET-based competition binding assay to measure its affinity for recombinant cereblon (CRBN) protein. The compound is dissolved in DMSO. Increasing concentrations are incubated with a His-tagged CRBN protein and a labeled probe. The signal decrease is used to calculate the IC50 and Ki values.
Cell Assay
Pomalidomide-5-C12-NH2 hydrochloride is a ligand and is not used in a typical cell-based assay alone. The ligand is first conjugated to a linker and a target-binding ligand to form a complete PROTAC. The resulting PROTAC is then tested in cells for its ability to degrade the target protein (measured by Western blot) and inhibit cell proliferation (measured by MTT).
Animal Protocol
A standard animal protocol for a PROTAC built using Pomalidomide-5-C12-NH2 hydrochloride would involve mouse xenograft models. Mice are implanted with tumor cells. When tumors reach a certain size, mice are treated intraperitoneally or orally with the PROTAC. Tumor growth is measured, and degradation of the target protein is confirmed by Western blot or IHC of tumor lysates.
ADME/Pharmacokinetics
Pomalidomide-5-C12-NH2 hydrochloride has a molecular weight of 493.04 and the formula C25H37ClN4O4. The product is a solid that should be stored at -20degC for up to 3 years. In solution, it is stable for 1 year at -80degC. It is a pure, solid intermediate that is stable under recommended conditions. Specific PK data are not available.
Toxicity/Toxicokinetics
Detailed toxicity data for Pomalidomide-5-C12-NH2 hydrochloride are not available. As a research chemical, standard laboratory safety precautions should be followed. The parent compound, Pomalidomide, has a known safety profile, but this derivative is a research intermediate only. Standard safety protocols for handling research chemicals apply.
Additional Infomation
Pomalidomide-5-C12-NH2 hydrochloride is a research-grade intermediate and is not approved for clinical use. It is a Pomalidomide-based cereblon (CRBN) ligand used in PROTAC synthesis. Its amine group allows for conjugation to protein-targeting ligands, making it a versatile tool for developing selective protein degraders in oncology, immunology, and neurodegenerative disease research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H37CLN4O4
Molecular Weight
493.04
Appearance
Light green to green solid powder
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0282 mL 10.1412 mL 20.2823 mL
5 mM 0.4056 mL 2.0282 mL 4.0565 mL
10 mM 0.2028 mL 1.0141 mL 2.0282 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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