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1,2-O-Isopropylidene-5-Op-toluoyl-aD-xylofuranose

Cat No.:V75909 Purity: ≥98%
1,2-O-Isopropylidene-5-Op-toluoyl-aD-xylofuranose is an analogue of purine nucleoside.
1,2-O-Isopropylidene-5-Op-toluoyl-aD-xylofuranose
1,2-O-Isopropylidene-5-Op-toluoyl-aD-xylofuranose Chemical Structure CAS No.: 75096-60-5
Product category: Nucleoside Antimetabolite/Analog
This product is for research use only, not for human use. We do not sell to patients.
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50mg
100mg
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Product Description
1,2-O-Isopropylidene-5-Op-toluoyl-aD-xylofuranose is an analogue of purine nucleoside. Purine nucleoside analogues have broad-spectrum anticancer effect targeting indolent lymphoid malignancies. The anti-cancer mechanism in this process relies on inhibiting DNA synthesis and inducing apoptosis.
1,2-O-Isopropylidene-5-O-p-toluoyl-a-D-xylofuranose is a purine nucleoside analog. It is a synthetic, chemically modified sugar derivative used as a key intermediate or building block in the chemical synthesis of more complex nucleoside analogs and saccharides. As a member of the purine nucleoside analog class, it is understood to have potential research applications for antitumor activity, which is typically associated with the inhibition of DNA synthesis and the induction of apoptosis.
Biological Activity I Assay Protocols (From Reference)
Targets
The described molecular target is not a specific biological protein but rather a class of molecules. As a purine nucleoside analog, its purpose is to serve as a building block. However, its intended downstream targets after further synthetic modifications are DNA polymerases and the DNA replication machinery. It acts as a precursor for compounds that compete with natural nucleosides, disrupting nucleic acid synthesis in rapidly dividing cells.
ln Vitro
Specific in vitro activity for this compound is not reported because it is primarily a synthetic intermediate. It is not typically tested directly in cell-based assays. Its value lies in its chemical reactivity, particularly for the methylation of carbohydrates and for forming glycosidic bonds, to create bioactive molecules. Any in vitro activity would be associated with the final compounds that are synthesized from it.
ln Vivo
This compound is used for research purposes in the synthesis of various saccharides and nucleoside analogs. It serves as a "building block" for the preparation of other molecules. Therefore, direct in vivo studies of this compound as a therapeutic agent are not typically performed. Its value is in enabling medicinal chemistry, not in providing direct biological activity in animal models.
Enzyme Assay
As a building block, it is not typically evaluated in cell-free enzyme assays. However, if the final synthetic product were a nucleoside analog, it could be tested in a DNA polymerase activity assay. In such a system, the DNA polymerase and a DNA template are incubated with a mixture of deoxynucleotide triphosphates (dNTPs) and the final compound (as a triphosphate derivative). The effect on the rate of DNA synthesis is then measured.
Cell Assay
This compound is not a drug and is not designed for direct testing on cells. It is a chemical intermediate used in the laboratory. It is typically handled and used in organic synthesis reactions (e.g., glycosylation reactions) to prepare other research-grade compounds, which may then be tested in cellular assays. Its purity (>98.00%) is confirmed by HPLC for synthetic use.
Animal Protocol
Since this compound is a synthetic intermediate, there are no established protocols for animal dosing. It is not intended for administration to animals. Its use is confined to the chemistry laboratory. It is typically stored at -20degC as a solid and shipped at room temperature. Its physical properties (e.g., solid, white) are characterized for use in chemical synthesis.
ADME/Pharmacokinetics
No in vivo pharmacokinetic data is available for this compound, as it is not intended for use as a therapeutic agent. It is a building block with a molecular weight of 308.33 and a predicted high degree of stability as a solid when stored at -20degC. Its solubility and chemical properties are defined for use in organic synthesis, not for biological drug development.
Toxicity/Toxicokinetics
This compound is not a therapeutic and has not been evaluated in toxicology studies. It is a research-grade chemical that is handled with standard laboratory safety precautions. It is stored at -20degC and is stable. As a chemical intermediate, its handling typically requires personal protective equipment (PPE) to avoid exposure, but specific systemic toxicology data is not applicable as it is not designed for use in animals.
References
[1]. Robak T, Robak P. Purine nucleoside analogs in the treatment of rarer chronic lymphoid leukemias. Curr Pharm Des. 2012;18(23):3373-88.
Additional Infomation
This compound is a synthetic building block in organic chemistry. It features an isopropylidene (acetonide) protecting group at the C1 and C2 positions and a p-toluoyl (4-methylbenzoyl) protecting group at the C5 position of a D-xylofuranose sugar. These protecting groups make it a valuable reagent for the regio-selective modification of carbohydrates, particularly for the synthesis of nucleoside analogs. It is not an approved drug and has no clinical trials. Its primary value is as a tool for medicinal chemistry and drug discovery research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H20O6
Molecular Weight
308.33
Exact Mass
308.126
CAS #
75096-60-5
PubChem CID
715277
Appearance
Typically exists as solid at room temperature
LogP
1.389
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
4
Heavy Atom Count
22
Complexity
415
Defined Atom Stereocenter Count
4
SMILES
O1[C@]([H])(C([H])([H])OC(C2C([H])=C([H])C(C([H])([H])[H])=C([H])C=2[H])=O)[C@@]([H])([C@]2([H])[C@@]1([H])OC(C([H])([H])[H])(C([H])([H])[H])O2)O[H]
InChi Key
AFHPWODMQGXJFV-QVHKTLOISA-N
InChi Code
InChI=1S/C16H20O6/c1-9-4-6-10(7-5-9)14(18)19-8-11-12(17)13-15(20-11)22-16(2,3)21-13/h4-7,11-13,15,17H,8H2,1-3H3/t11-,12+,13-,15-/m1/s1
Chemical Name
[(3aR,5R,6S,6aR)-6-hydroxy-2,2-dimethyl-3a,5,6,6a-tetrahydrofuro[2,3-d][1,3]dioxol-5-yl]methyl 4-methylbenzoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.2433 mL 16.2164 mL 32.4328 mL
5 mM 0.6487 mL 3.2433 mL 6.4866 mL
10 mM 0.3243 mL 1.6216 mL 3.2433 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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