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Zagociguat

Cat No.:V74638 Purity: ≥98%
Zagociguat is a stimulator of soluble guanylate cyclase.
Zagociguat
Zagociguat Chemical Structure CAS No.: 2201048-82-8
Product category: Guanylate Cyclase
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
Other Sizes
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Product Description
Zagociguat is a stimulator of soluble guanylate cyclase. Zagociguat increases nitric oxide (NO) signaling, resulting in increased cyclic guanosine monophosphate production. Zagociguat may be used for studying non-central nervous system/CNS diseases.
Zagociguat (CAS#: 2201048-82-8) is a stimulator of soluble guanylate cyclase (sGC). It enhances nitric oxide (NO) signaling by increasing the production of cyclic guanosine monophosphate (cGMP). Zagociguat has central nervous system penetrance and is being investigated for the treatment of serious neurodegenerative disorders, including mitochondrial disease, Alzheimer's disease (AD), and cognitive impairment associated with schizophrenia.
Biological Activity I Assay Protocols (From Reference)
Targets
Soluble Guanylate Cyclase[1]
Soluble guanylate cyclase (sGC). Zagociguat is a stimulator of sGC. By activating this enzyme, it increases the production of cGMP, a key second messenger in the NO signaling pathway. This pathway is involved in various physiological processes, including vasodilation, neurotransmission, and neuroprotection. Its ability to penetrate the CNS makes it relevant for neurological applications.
ln Vitro
Zagociguat is a stimulator of soluble guanylate cyclase (sGC), enhancing NO signaling and increasing cGMP production. By activating this enzyme, it potentiates the effects of NO, which can lead to vasodilation and other downstream effects. Its activity is being explored for its potential to treat neurodegenerative diseases by improving neuronal function and survival.
ln Vivo
In vivo, Zagociguat is being investigated for its potential to treat serious neurodegenerative disorders. By stimulating sGC and increasing cGMP production in the brain, it may improve cognitive function and slow disease progression. Its central nervous system penetrance is a key feature that enables it to exert its effects on the brain.
Enzyme Assay
The activity of Zagociguat is typically assessed using enzyme activity assays with purified sGC. The enzyme is incubated with its substrate, GTP, in the presence of the compound, and the production of cGMP is measured. This allows for the determination of the compound's potency as an sGC stimulator. Binding assays can also be used to study its interaction with the enzyme.
Cell Assay
Cellular assays for sGC stimulators involve treating cells that express sGC, such as neuronal or vascular cells, with the compound. The increase in intracellular cGMP levels is then measured as a readout of sGC activation. This confirms that the compound can effectively penetrate cells and stimulate sGC activity in a relevant biological context.
Animal Protocol
In vivo efficacy of Zagociguat is being evaluated in preclinical and clinical studies for neurodegenerative diseases. Animal models of Alzheimer's disease or other cognitive disorders are used to assess the compound's effects on cognitive function, neuroinflammation, and neuronal survival. Its ability to penetrate the CNS is a critical factor for its efficacy in these models.
ADME/Pharmacokinetics
Zagociguat is a small molecule with the molecular formula C16H10F4N6 and a molecular weight of 362.28. It is soluble in DMSO. As a CNS-penetrant compound, its pharmacokinetic properties, such as oral bioavailability and brain penetration, are key features. It is being developed for the treatment of neurological disorders.
Toxicity/Toxicokinetics
No specific toxicity data is available for Zagociguat. As a therapeutic candidate for neurodegenerative diseases, its safety profile is a critical area of investigation. Potential toxicities could be related to its mechanism of action, such as excessive vasodilation or effects on cGMP signaling in peripheral tissues. Standard preclinical toxicology studies would be required to assess its safety.
References

[1]. Accelerated Development of a Scalable Synthesis of CY6463, a CNS-Penetrant sGC Stimulator for the Treatment of Neurodegenerative Diseases. Org Process Res Dev. 2021;25(10):2288-2299.

Additional Infomation
Zagociguat (CAS#: 2201048-82-8) is a stimulator of soluble guanylate cyclase (sGC) with central nervous system penetrance. It is being investigated for the treatment of serious neurodegenerative disorders, including Alzheimer's disease. By enhancing NO signaling and increasing cGMP production, it may offer neuroprotective benefits. It is an investigational agent and is not yet approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H10F4N6
Molecular Weight
362.284415721893
Exact Mass
362.09
CAS #
2201048-82-8
PubChem CID
134304734
Appearance
Off-white to light yellow solid powder
LogP
3.4
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
3
Heavy Atom Count
26
Complexity
492
Defined Atom Stereocenter Count
0
SMILES
FC1C=CC=CC=1CC1C2=NC=CN2C=C(C2=NNC(C(F)(F)F)=N2)N=1
InChi Key
GTKNNCQKFKGSHR-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H10F4N6/c17-10-4-2-1-3-9(10)7-11-14-21-5-6-26(14)8-12(22-11)13-23-15(25-24-13)16(18,19)20/h1-6,8H,7H2,(H,23,24,25)
Chemical Name
8-[(2-fluorophenyl)methyl]-6-[5-(trifluoromethyl)-1H-1,2,4-triazol-3-yl]imidazo[1,2-a]pyrazine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 250 mg/mL (690.07 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7603 mL 13.8015 mL 27.6030 mL
5 mM 0.5521 mL 2.7603 mL 5.5206 mL
10 mM 0.2760 mL 1.3801 mL 2.7603 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
Title:An Open-label Extension Safety Study of MELAS Patients Who Completed TIS6463-203 (PRIZM)
Status:Enrolling by invitation
updateDate:2026-05-04
Ctid:NCT06961344

Link: https://clinicaltrials.gov/ct2/show/NCT06961344

Conditions:Mitochondrial Encephalopathy, Lactic Acidosis and Stroke-Like Episodes (MELAS Syndrome)
Interventions:zagociguat 15mg
Phase:Phase 2
Title:A Phase 2b Study of Zagociguat in Patients With MELAS
Status:Active, not recruiting
updateDate:2026-03-25
Ctid:NCT06402123

Link: https://clinicaltrials.gov/ct2/show/NCT06402123

Conditions:Mitochondrial Encephalopathy, Lactic Acidosis and Stroke-Like Episodes (MELAS Syndrome)
Interventions:Placebo
Phase:Phase 2
Title:A Study of the Effects of CY6463 in Participants With Alzheimer's Disease With Vascular Pathology
Status:Terminated
updateDate:2024-10-30
Ctid:NCT04798989

Link: https://clinicaltrials.gov/ct2/show/NCT04798989

Conditions:Alzheimer's Disease With Vascular Pathology
Interventions:Placebo
Phase:Phase 2
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Title:Phase 2a Study of IW-6463 in Adults Diagnosed With Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episodes (MELAS)
Status:Terminated
updateDate:2024-08-29
Ctid:NCT04475549

Link: https://clinicaltrials.gov/ct2/show/NCT04475549

Conditions:MELAS
Interventions:IW-6463 Tablets
Phase:Phase 2
Title:A Study of IW-6463 in Healthy Volunteers
Status:Completed
updateDate:2024-08-16
Ctid:NCT03856827

Link: https://clinicaltrials.gov/ct2/show/NCT03856827

Conditions:Other
Interventions:Matching Placebo
Phase:Phase 1
Title:IW-6463 Safety Study in Healthy Elderly Subjects
Status:Terminated
updateDate:2024-08-16
Ctid:NCT04240158

Link: https://clinicaltrials.gov/ct2/show/NCT04240158

Conditions:Other
Interventions:Matching Placebo
Phase:Phase 1
Title:Study to Assess the Safety and Pharmacokinetics of CY6463 in Participants With Stable Schizophrenia
Status:Completed
updateDate:2024-08-13
Ctid:NCT04972227

Link: https://clinicaltrials.gov/ct2/show/NCT04972227

Conditions:Schizophrenia
Interventions:Placebo
Phase:Phase 1

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