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PROTAC BRAF-V600E degrader-2

Cat No.:V74130 Purity: ≥98%
PROTAC BRAF-V600E degrader-2 (compound 12) is a potent BRAF-V600E degrader with Kd of 14.4 nM and 9.5 nM for BRAF and BRAF-V600E respectively.
PROTAC BRAF-V600E degrader-2
PROTAC BRAF-V600E degrader-2 Chemical Structure CAS No.: 2417296-82-1
Product category: PROTACs
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
Other Sizes
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Product Description
PROTAC BRAF-V600E degrader-2 (compound 12) is a potent BRAF-V600E degrader with Kd of 14.4 nM and 9.5 nM for BRAF and BRAF-V600E respectively. PROTAC BRAF-V600E degrader-2 selectively degrades the kinase domain of BRAF-V600E but not wild-type BRAF. PROTAC BRAF-V600E degrader-2 inhibits melanoma cell growth.
PROTAC BRAF‑V600E degrader‑2 (compound 12) is a potent, selective PROTAC (proteolysis‑targeting chimera) that targets the BRAF‑V600E mutant protein. It selectively degrades the kinase domain of BRAF‑V600E but not wild‑type BRAF, with Kd values of 14.4 nM for BRAF and 9.5 nM for BRAF‑V600E. This compound inhibits melanoma cell growth by inducing BRAF‑V600E degradation.
Biological Activity I Assay Protocols (From Reference)
Targets
BRAF-V600E 9.5 nM (Kd) Braf 14.4 nM (Kd) Cereblon
BRAF, BRAF-V600E
ln Vitro
PROTAC BRAF-V600E degrader-2 (compound 12) shows binding affinities (Kd) of 14.4 nM for BRAF and 9.5 nM for the BRAF-V600E mutant. It selectively degrades the kinase domain of BRAF-V600E but does not degrade wild‑type BRAF, demonstrating excellent selectivity. The compound inhibits the growth of melanoma cells that harbor the BRAF‑V600E mutation.
ln Vivo
No detailed in vivo activity data has been reported for PROTAC BRAF-V600E degrader-2. As a selective BRAF-V600E degrader, it is expected to suppress tumor growth in BRAF‑mutant melanoma xenograft models with reduced potential for paradoxical activation of the MAPK pathway compared to traditional BRAF inhibitors.
Enzyme Assay
For binding affinity determination, recombinant BRAF and BRAF-V600E proteins are incubated with various concentrations of PROTAC BRAF-V600E degrader-2 (0.1‑1000 nM). Kd values are determined using surface plasmon resonance (SPR) or fluorescence polarization‑based competition binding assays.
Cell Assay
PROTAC BRAF-V600E degrader-2 is dissolved in DMSO and diluted in cell culture media (final DMSO ≤0.1%). BRAF‑V600E mutant melanoma cells (e.g., A375, SK-MEL-28) are treated with the compound at concentrations ranging from 1 nM to 10 uM for 6‑24 h. BRAF and phospho‑ERK levels are assessed by Western blotting. Cell proliferation is evaluated using MTT or CellTiter-Glo assays.
Animal Protocol
No detailed in vivo protocol for PROTAC BRAF-V600E degrader-2 has been reported. Based on standard procedures for BRAF-targeting PROTACs, the compound would be formulated in a suitable vehicle (e.g., 10% DMSO, 40% PEG400, 5% Tween 80) and administered intraperitoneally or orally to mice bearing BRAF‑V600E melanoma xenografts. Tumor growth and degradation of BRAF-V600E would be assessed.
ADME/Pharmacokinetics
No PK data for PROTAC BRAF-V600E degrader-2 has been reported. As a PROTAC degrader, it is likely to have moderate oral bioavailability and require optimization for metabolic stability. Detailed parameters such as half‑life, Cmax, and clearance are not publicly available.
Toxicity/Toxicokinetics
No toxicity data for PROTAC BRAF-V600E degrader-2 has been reported. As a selective degrader of mutant BRAF, potential toxicities may include skin rash, gastrointestinal effects, and paradoxical activation of the MAPK pathway in wild‑type BRAF cells if selectivity is lost at high doses. No toxicology studies have been published.
References

[1]. Discovery of Selective Small Molecule Degraders of BRAF-V600E. J Med Chem. 2020 Apr 23;63(8):4069-4080.

Additional Infomation
PROTAC BRAF-V600E degrader-2 (compound 12; CAS: 2417296-82-1; formula: C42H3₉F2N₇O₈S; MW: 839.86) is a highly selective, potent PROTAC degrader of BRAF-V600E for research use only. It selectively degrades the mutant protein without affecting wild‑type BRAF, potentially offering a safer therapeutic window compared to non‑selective BRAF inhibitors. No clinical trials or regulatory approvals have been reported.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
839.255
CAS #
2417296-82-1
PubChem CID
155551346
Appearance
Typically exists as solid at room temperature
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
13
Rotatable Bond Count
16
Heavy Atom Count
60
Complexity
1730
Defined Atom Stereocenter Count
0
SMILES
CCCS(=O)(=O)NC1=C(C(=C(C=C1)F)C(=O)C2=CNC3=C2C=C(C=N3)C4=CC=C(C=C4)CNC(=O)CCCCNC5=CC6=C(C=C5)C(=O)N(C6=O)C7CCC(=O)NC7=O)F
InChi Key
AAIPPJPUZKZIHC-UHFFFAOYSA-N
InChi Code
InChI=1S/C42H39F2N7O8S/c1-2-17-60(58,59)50-32-13-12-31(43)36(37(32)44)38(54)30-22-48-39-28(30)18-25(21-47-39)24-8-6-23(7-9-24)20-46-34(52)5-3-4-16-45-26-10-11-27-29(19-26)42(57)51(41(27)56)33-14-15-35(53)49-40(33)55/h6-13,18-19,21-22,33,45,50H,2-5,14-17,20H2,1H3,(H,46,52)(H,47,48)(H,49,53,55)
Chemical Name
N-[[4-[3-[2,6-difluoro-3-(propylsulfonylamino)benzoyl]-1H-pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]-5-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]amino]pentanamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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