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DSPE-N3

Cat No.:V74082 Purity: ≥98%
DSPE-N3 is a lipid.
DSPE-N3
DSPE-N3 Chemical Structure CAS No.: 2839508-98-2
Product category: Liposome
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
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Product Description
DSPE-N3 is a lipid. DSPE-N3 may be utilized in a variety of biochemical studies. DSPE-N3 is a reagent for click chemistry. It has an azide (N3) moiety and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing an alkyne group. SPAAC (Strain-promoted alkyne-azide cycloaddition) may also happen with compounds bearing a BCN or DBCO group.
DSPE-N3 is a phospholipid compound composed of 1,2-distearoyl-sn-glycero-3-phosphoethanolamine (DSPE) conjugated to an azide (N3) group via a linker. It contains two saturated fatty acids (stearoyl, C18:0) and can self-assemble into a lipid bilayer. DSPE-N3 is used to prepare liposomes or LNPs with surface azide groups for click chemistry conjugation (e.g., copper-catalyzed azide-alkyne cycloaddition (CuAAC) or strain-promoted azide-alkyne cycloaddition (SPAAC)) with alkyne-functionalized molecules (e.g., antibodies, PEG, dyes, drugs).
Biological Activity I Assay Protocols (From Reference)
Targets
None (excipient). DSPE-N3 provides azide groups on the surface of liposomes or LNPs, enabling bioorthogonal click chemistry conjugation with alkyne-modified targeting ligands (e.g., DBCO-, BCN-, or alkyne-antibodies, peptides, PEG). It is used for targeted drug delivery, imaging, and surface functionalization.
ln Vitro
DSPE-N3 liposomes are stable and can be functionalized with targeting ligands via click chemistry. In vitro, antibody-conjugated DSPE-N3 liposomes (via SPAAC with DBCO-antibody) show increased cellular uptake and enhanced cytotoxicity in target cells. Conjugation efficiency is high (>85%), and the copper-free SPAAC reaction is biocompatible. DSPE-N3 can be incorporated into liposomes at 1-10 mol%.
ln Vivo
DSPE-N3 liposomes have been evaluated for targeted drug delivery in vivo. Antibody- or peptide-targeted DSPE-N3 liposomes encapsulating chemotherapeutic agents show enhanced tumor accumulation and improved therapeutic efficacy in mouse xenograft models. The saturated DSPE acyl chains (C18:0) provide resistance to phospholipase degradation, prolonging circulation time. Click chemistry conjugation is performed on pre-formed liposomes, allowing precise control over ligand density.
Enzyme Assay
DSPE-N3 (CAS 2839508-98-2, typical formula C44H₈₆N4O10P) is a white to off-white solid powder soluble in chloroform and DMSO. For liposome preparation: DSPE-N3 is mixed with other lipids (e.g., DOPC/DSPC, cholesterol, PEG2000-DSPE) in chloroform (typical molar ratio 5-10% for DSPE-N3). The mixture is dried, hydrated with buffer (PBS, pH 7.4), and extruded (50-200 nm pores) to form Azide-liposomes. For ligand conjugation (SPAAC, copper-free): DBCO-functionalized ligands (e.g., DBCO-antibody, DBCO-PEG, DBCO-peptide) are incubated with Azide-liposomes at room temperature or 37degC for 2-24 h in PBS, using a ligand:azide ratio of 1:2-1:10. Conjugation efficiency is measured by HPLC, fluorescent labeling, or by quantifying remaining azide groups using a fluorogenic azide-reactive probe (e.g., Cy3-DBCO). For CuAAC (copper-catalyzed): alkyne-modified ligands are incubated with Azide-liposomes, copper sulfate, sodium ascorbate, and THPTA ligand at room temperature for 1-2 h; excess copper is removed by chelation (EDTA).
Cell Assay
For cellular uptake studies, cancer cells (e.g., SK-BR-3, MDA-MB-231) are seeded in 96- or 24-well plates (1-5×10⁴ cells/well) and treated with ligand-conjugated DSPE-N3 liposomes or non-targeted liposomes (0.1-1 mg/mL total lipid) containing a fluorescent dye (e.g., DiD, Rhodamine). After 2-24 h, cellular uptake is quantified by flow cytometry, and intracellular localization is visualized by confocal microscopy. Cytotoxicity is evaluated by MTT assays; ligand-targeted liposomes may show enhanced cytotoxicity. Conjugation stability: liposomes are incubated in serum (10-50% FBS) at 37degC for 24-48 h, and ligand density is measured by fluorescence to assess linker stability.
Animal Protocol
For in vivo studies, DSPE-N3 liposomes (with ligand conjugated via SPAAC) are administered intravenously via the tail vein to 6-8 week old female BALB/c nude or C57BL/6 mice at lipid doses of 10-50 mg/kg, with encapsulated chemotherapeutics (e.g., doxorubicin 2-5 mg/kg). Tumor volume is measured every 2-3 days, and TGI is calculated. For biodistribution: mice are euthanized at 1, 4, 24, 48, 72 h; organs (liver, spleen, kidney, lung, tumor) are harvested, homogenized, and analyzed for drug content by HPLC. Pharmacodynamics are assessed by tumor immunohistochemistry (Ki67, TUNEL). For imaging: fluorescently labeled liposomes (e.g., with Cy5) are used for in vivo fluorescence imaging. DSPE-N3 is stable in circulation; the azide group does not react with endogenous biomolecules due to bioorthogonality, ensuring that conjugation occurs only when intended.
ADME/Pharmacokinetics
DSPE-N3, incorporated into PEGylated liposomes (with PEG2000-DSPE), extends circulation half-life to 6-12 h. The saturated DSPE acyl chains (C18:0) increase membrane rigidity and resistance to phospholipase degradation. Azide groups are chemically inert toward biological molecules, ensuring no unwanted reactions in vivo. Liposomes are cleared primarily by the liver (∼30-50% of dose) and spleen (∼10-20%). Ligands conjugated via click chemistry (especially SPAAC with DBCO) are stable in circulation for at least 24-48 h.
Toxicity/Toxicokinetics
DSPE-N3 has low toxicity. The azide group has no known toxicity at the concentrations used in liposomes (typically <10 mol%). The click chemistry reactions (CuAAC, SPAAC) used for conjugation are performed ex vivo before administration; residual copper (if using CuAAC) should be removed to avoid toxicity. In vivo, DSPE-N3 liposomes are well-tolerated at lipid doses ≤100 mg/kg. Standard PEGylated liposome safety applies: potential for CARPA, mild hepatotoxicity (transient ALT/AST elevation), and splenic accumulation. No severe toxicity has been reported.
References

[1]. Compounds for regulating trained immunity, and their methods of use. Patent. WO2022198101A1.

Additional Infomation
DSPE-N3 (CAS 2839508-98-2, C44H₈₆N4O10P, MW approximately 885-900 Da) has >95% purity and is a white to off-white solid powder. Storage at -20degC under inert atmosphere is required to maintain azide integrity (avoid light, heat). Soluble in chloroform and DMSO. DSPE-N3 is a research-grade functionalized phospholipid; no clinical approvals have been reported. It is used for preparing targeted liposomes and LNPs via click chemistry, allowing conjugation of antibodies, peptides, sugars, dyes, and PEG for targeted drug delivery, imaging, and diagnostic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C43H83N4O9P
Molecular Weight
831.114294290543
Exact Mass
830.589
CAS #
2839508-98-2
PubChem CID
162130844
Appearance
White to off-white solid powder
LogP
16.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
46
Heavy Atom Count
57
Complexity
1060
Defined Atom Stereocenter Count
1
SMILES
CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCNC(=O)CN=[N+]=[N-])OC(=O)CCCCCCCCCCCCCCCCC
InChi Key
ZIQJHLAPBLHPFF-RRHRGVEJSA-N
InChi Code
InChI=1S/C43H83N4O9P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-42(49)53-38-40(39-55-57(51,52)54-36-35-45-41(48)37-46-47-44)56-43(50)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h40H,3-39H2,1-2H3,(H,45,48)(H,51,52)/t40-/m1/s1
Chemical Name
[(2R)-3-[2-[(2-azidoacetyl)amino]ethoxy-hydroxyphosphoryl]oxy-2-octadecanoyloxypropyl] octadecanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 12.5 mg/mL (15.04 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.2032 mL 6.0161 mL 12.0321 mL
5 mM 0.2406 mL 1.2032 mL 2.4064 mL
10 mM 0.1203 mL 0.6016 mL 1.2032 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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