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Dechloro Rivaroxaban

Cat No.:V73135 Purity: ≥98%
Dechloro Rivaroxaban is an orally bioactive, selective inhibitor of Factor Xa.
Dechloro Rivaroxaban
Dechloro Rivaroxaban Chemical Structure CAS No.: 1415566-28-7
Product category: Factor Xa
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
Dechloro Rivaroxaban is an orally bioactive, selective inhibitor of Factor Xa. Dechloro Rivaroxaban inhibits free FXa in humans with a Ki of 0.4 nM. Dechloro Rivaroxaban inhibits prothrombin and fibrin-related FXa activities with IC50s of 2.1 nM and 92 nM, respectively.
Dechloro Rivaroxaban is a structural analog of the FDA-approved anticoagulant drug Rivaroxaban, but with the chlorine atom removed from the thiophene ring. It functions as a highly selective, direct, and orally active inhibitor of activated coagulation Factor X (FXa). It serves as a valuable reference molecule for studying structure-activity relationships and for the development of next-generation FXa inhibitors.
Biological Activity I Assay Protocols (From Reference)
Targets
Factor Xa (FXa). Dechloro Rivaroxaban is a highly potent and selective, orally active, direct inhibitor of the active site of FXa, the key serine protease in the final common pathway of the coagulation cascade. It has a Ki of 0.4 nM against human free FXa.
ln Vitro
Dechloro Rivaroxaban is a highly selective, direct inhibitor of Factor Xa. It inhibits free FXa with a Ki of 0.4 nM. It inhibits prothrombinase activity with an IC50 of 2.1 nM and fibrin-associated FXa activity with an IC50 of 92 nM. These values indicate it is a potent inhibitor of both soluble and clot-bound FXa. Its selectivity for FXa over other proteases in the coagulation cascade is expected to be high, based on the profile of its parent drug, Rivaroxaban.
ln Vivo
In vivo, Dechloro Rivaroxaban is an orally bioactive, selective inhibitor of Factor Xa. As an analog of Rivaroxaban, it is predicted to have excellent oral bioavailability and potent antithrombotic activity in animal models of venous and arterial thrombosis. By inhibiting FXa, it reduces thrombin generation, fibrin clot formation, and platelet activation. The lack of the chlorine atom may subtly alter its PK or selectivity profile.
Enzyme Assay
The potency of Dechloro Rivaroxaban against FXa is determined in cell-free enzyme assays. Human Factor Xa is incubated with a chromogenic substrate (e.g., S-2765, a FXa-specific peptide-pNA conjugate) in a buffer containing Tris-HCl, NaCl, and CaCl2. Dechloro Rivaroxaban is added at concentrations ranging from 0.01-1000 nM. The reaction is monitored by the increase in absorbance at 405 nm. The Ki (0.4 nM) is calculated from the rate of pNA release. Selectivity is assessed by testing the compound against a panel of other coagulation proteases (thrombin, FIXa, FVIIa, FXIa, FXIIa, and activated protein C).
Cell Assay
Cellular assays are not typical for direct FXa inhibitors, as FXa functions as a soluble protease in the plasma. However, the inhibition of prothrombinase activity can be assessed in a cellular context. The prothrombinase complex is assembled on the surface of activated platelets or endothelial cells. Dechloro Rivaroxaban is added to the reaction, and the generation of thrombin is measured using a chromogenic thrombin substrate. The ability to inhibit fibrin-associated FXa is also tested in a system where FXa is bound to pre-formed fibrin clots.
Animal Protocol
Dechloro Rivaroxaban is orally active. In vivo efficacy studies would be performed in standard animal models of thrombosis. For example, in a rat model of venous thrombosis, the compound would be administered orally at doses of 1-10 mg/kg. The endpoint is the reduction in thrombus weight. In a model of arterial thrombosis (e.g., FeCl3-induced carotid artery injury), the endpoint is the time to occlusion. The pharmacodynamic effect would be measured as the prolongation of the prothrombin time (PT) in plasma samples.
ADME/Pharmacokinetics
Dechloro Rivaroxaban has a molecular formula of C19H19N3O5S and a molecular weight of 401.44 g/mol. Based on its structural similarity to Rivaroxaban, it is expected to have high oral bioavailability (>80% in humans). It is metabolized primarily by CYP3A4 and is a substrate of the efflux transporters P-gp and BCRP. The half-life is expected to be 5-9 hours, supporting once-daily dosing. Detailed PK data are not provided for this specific analog.
Toxicity/Toxicokinetics
No detailed toxicological data are available for Dechloro Rivaroxaban. However, as an analog of a clinically approved drug, it is likely to have a similar safety profile. The parent drug, Rivaroxaban, is generally well-tolerated. The major adverse event is bleeding (e.g., gastrointestinal bleeding, intracranial hemorrhage). Allergic reactions and hepatotoxicity are also known but rare. The dechloro analog may have a different selectivity profile. It is intended for research use only.
References

[1]. In vitro metabolism of rivaroxaban, an oral, direct factor Xa inhibitor, in liver microsomes and hepatocytes of rats, dogs, and humans. Drug Metab Dispos. 2009 May;37(5):1046-55.

Additional Infomation
Dechloro Rivaroxaban is primarily used as an analytical reference standard and a research tool. It is a known impurity of Rivaroxaban and is used in quality control. It is not an FDA-approved drug. Its utility lies in understanding the structure-activity relationship of the oxazolidinone class of FXa inhibitors. It is sold for research purposes only and should not be used in humans.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H19N3O5S
Molecular Weight
401.44
Exact Mass
401.104
CAS #
1415566-28-7
PubChem CID
66926287
Appearance
White to off-white solid powder
Density
1.400±0.06 g/cm3 (20 ºC 760 Torr)
Boiling Point
758.0±60.0 °C(Predicted)
Melting Point
216-218 °C
LogP
1.5
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
5
Heavy Atom Count
28
Complexity
610
Defined Atom Stereocenter Count
1
SMILES
C1COCC(=O)N1C2=CC=C(C=C2)N3C[C@@H](OC3=O)CNC(=O)C4=CC=CS4
InChi Key
SJVCANNMDYDYLN-HNNXBMFYSA-N
InChi Code
InChI=1S/C19H19N3O5S/c23-17-12-26-8-7-21(17)13-3-5-14(6-4-13)22-11-15(27-19(22)25)10-20-18(24)16-2-1-9-28-16/h1-6,9,15H,7-8,10-12H2,(H,20,24)/t15-/m0/s1
Chemical Name
N-[[(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl]methyl]thiophene-2-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4910 mL 12.4552 mL 24.9103 mL
5 mM 0.4982 mL 2.4910 mL 4.9821 mL
10 mM 0.2491 mL 1.2455 mL 2.4910 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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