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Glutaric acid-d4 (glutaric acid d4)

Cat No.:V72675 Purity: ≥98%
Glutaric acid-d4 is the deuterated form of Glutaric acid.
Glutaric acid-d4 (glutaric acid d4)
Glutaric acid-d4 (glutaric acid d4) Chemical Structure CAS No.: 19136-99-3
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes

Other Forms of Glutaric acid-d4 (glutaric acid d4):

  • Glutaric anhydride-d6 (Dihydro-2H-pyran-2,6(3H)-dione-d6; Dihydro-3H-pyran-2,6-dione-d6; Glutaric acid anhydride-d6)
  • 2-Ketoglutaric acid-13C5 (alpha-ketoglutaric acid-13C5)
  • 3-Hydroxyglutaric acid-d5
  • DSPE-glutaric acid
  • Glutaric acid
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Product Description
Glutaric acid-d4 is the deuterated form of Glutaric acid. Glutaric acid, a C5 dicarboxylic acid, is an intermediate in the lysine and tryptophan catabolic pathways. Glutaric acid affects pericyte contractility and migration. Glutaric acid is an indicator of type I glutaric aciduria.
Glutaric acid-d4 is the deuterium-labeled form of glutaric acid, a naturally occurring C5 dicarboxylic acid and an intermediate in the catabolic pathways of lysine and tryptophan. The deuterated version has four hydrogen atoms replaced with deuterium at positions 2 and 4, with molecular formula C5H4D4O4 and MW 136.14. Glutaric acid affects pericyte contractility and migration, and is an indicator of Glutaric Aciduria Type I (GA1). The compound is used as an internal standard in mass spectrometry for quantification studies.
Biological Activity I Assay Protocols (From Reference)
Targets
Glutaric acid-d4 shares the same biological targets as its non-deuterated parent compound. It interacts with enzymes involved in lysine and tryptophan catabolism, particularly glutaryl-CoA dehydrogenase (GCDH), the enzyme deficient in Glutaric Aciduria Type I. Glutaric acid accumulates in the mitochondria and central nervous system when GCDH is defective, leading to neurological damage. The compound also affects pericyte contractility and migration, suggesting involvement in vascular regulation.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
In vitro, glutaric acid (non-deuterated) is used to study metabolic pathways involving lysine and tryptophan degradation. It affects pericyte contractility and migration in cell culture models, which may contribute to blood-brain barrier dysfunction in GA1. Glutaric acid also influences cellular metabolism and mitochondrial function. The deuterated version (Glutaric acid-d4) is not used for activity studies but serves as an internal standard for quantification of glutaric acid in biological samples such as urine, plasma, and dried blood spots.
ln Vivo
In vivo, glutaric acid (non-deuterated) accumulates in patients with Glutaric Aciduria Type I (GA1), leading to neurological damage including striatal injury and movement disorders. In animal models, administration of glutaric acid induces neurotoxicity and oxidative stress, mimicking the pathophysiology of GA1. Glutaric acid-d4 is not used for in vivo activity studies; instead, it is used as an analytical standard to quantify endogenous glutaric acid levels in patient samples for diagnostic and monitoring purposes.
Enzyme Assay
For non-cellular assays (analytical quantification), Glutaric acid-d4 is prepared as a stock solution in methanol (1 mg/mL). For LC-MS/MS analysis, a calibration curve for glutaric acid is prepared in human urine or plasma (0.1-1000 ng/mL) with a fixed concentration of glutaric acid-d4 (e.g., 50 ng/mL). Samples are extracted using protein precipitation with acetonitrile or ethyl acetate, followed by centrifugation. The supernatant is injected onto a C18 column with a mobile phase of 0.1% formic acid in water and acetonitrile (gradient elution). Ions are monitored in MRM mode: m/z 136.1 → 74.1 for glutaric acid-d4, m/z 132.1 → 70.1 for non-deuterated glutaric acid.
Cell Assay
For cell-based assays, glutaric acid studies use primary neurons or astrocytes from rodent brain. Cells are seeded in 6-well plates (1×10⁶ cells/well) in Neurobasal medium with B27 supplement. After 7 days of differentiation, cells are treated with glutaric acid (0.1-5 mM) for 24-72 hours. Cell viability is assessed by MTT or LDH release assays. Oxidative stress is evaluated by measuring ROS production (DCFH-DA, 10 uM, 30 min), lipid peroxidation (MDA levels), and antioxidant enzyme activities (SOD, catalase). Mitochondrial membrane potential is assessed using JC-1 staining. Glutaric acid-d4 can be used to quantify intracellular glutaric acid levels in treated cells by LC-MS.
Animal Protocol
For in vivo animal experiments, Glutaric Aciduria Type I (GA1) models are used. Male Wistar rats (7 days old) are administered glutaric acid (1.5-3.0 umol/g body weight) subcutaneously twice daily for 3-5 days to induce neurotoxicity. Alternatively, GCDH knockout mice are used. Neurological assessments include open field tests, rotarod performance, and Morris water maze. Brain tissues (striatum, cortex, hippocampus) are collected for histological analysis (H&E, Fluoro-Jade B staining), measurement of oxidative stress markers (GSH, TBARS), and quantification of glutaric acid levels by LC-MS/MS using glutaric acid-d4 as internal standard.
ADME/Pharmacokinetics
Glutaric acid-d4 has a molecular weight of 136.14 and a density of 1.3+/-0.1 g/cm3, with a boiling point of 302.9+/-15.0degC. The compound is a white to off-white solid powder, soluble in DMSO and water. It has a logP of -1.04, indicating high hydrophilicity. The deuterium atoms at positions 2 and 4 provide a mass shift of +4 Da, enabling clear differentiation from non-deuterated glutaric acid in mass spectrometry. The compound should be stored as a powder at -20degC, protected from light and moisture, with stability for up to 3 years.
Toxicity/Toxicokinetics
Glutaric acid-d4 is a stable isotope-labeled compound with low toxicity at analytical concentrations (ng-ug per sample). The non-deuterated parent compound, glutaric acid, at high doses can cause neurotoxicity and oxidative stress. However, when used as an internal standard, the amount is negligible and poses no toxicity risk. Standard laboratory safety precautions for handling organic compounds should be followed. The compound is non-radioactive and poses no radiation hazard.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

[2]. Production of glutaric acid from 5-aminovaleric acid by robust whole-cell immobilized with polyvinyl alcohol and polyethylene glycol. Enzyme Microb Technol. 2019 Sep;128:72-78.

[3]. Proposed recommendations for diagnosing and managing individuals with glutaric aciduria type I: second revision. J Inherit Metab Dis. 2017 Jan;40(1):75-101.

[4]. Glutaric Acid Affects Pericyte Contractility and Migration: Possible Implications for GA-I Pathogenesis. Mol Neurobiol. 2019 Nov;56(11):7694-7707.

Additional Infomation
Glutaric acid-d4 is an analytical standard and research tool, not an approved drug. It has not undergone clinical trials for therapeutic use. Its primary application is as an internal standard for the quantitative analysis of glutaric acid in biological samples by LC-MS/MS. This is clinically relevant for the diagnosis and monitoring of Glutaric Aciduria Type I (GA1), a rare inherited metabolic disorder. The compound is also used in metabolomics research to study lysine and tryptophan metabolism. It is available for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C5H4D4O4
Molecular Weight
136.14
Exact Mass
136.067
CAS #
19136-99-3
Related CAS #
Glutaric acid;110-94-1
PubChem CID
53952054
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
302.9±15.0 °C at 760 mmHg
Flash Point
151.2±16.9 °C
Vapour Pressure
0.0±1.4 mmHg at 25°C
Index of Refraction
1.477
LogP
-1.04
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
4
Heavy Atom Count
9
Complexity
104
Defined Atom Stereocenter Count
0
SMILES
[2H]C([2H])(CC([2H])([2H])C(=O)O)C(=O)O
InChi Key
JFCQEDHGNNZCLN-RRVWJQJTSA-N
InChi Code
InChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9)/i2D2,3D2
Chemical Name
2,2,4,4-tetradeuteriopentanedioic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.3454 mL 36.7269 mL 73.4538 mL
5 mM 1.4691 mL 7.3454 mL 14.6908 mL
10 mM 0.7345 mL 3.6727 mL 7.3454 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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