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Glycodeoxycholic acid-d4 (Glycodeoxycholic acid d4)

Cat No.:V72585 Purity: ≥98%
Glycodeoxycholic acid-d4 is the deuterium labelled form of Glycodeoxycholic Acid.
Glycodeoxycholic acid-d4 (Glycodeoxycholic acid d4)
Glycodeoxycholic acid-d4 (Glycodeoxycholic acid d4) Chemical Structure CAS No.: 1069132-37-1
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of Glycodeoxycholic acid-d4 (Glycodeoxycholic acid d4):

  • Glycodeoxycholic acid-d6 (Glycodeoxycholic acid d6)
  • 3-Sulfo-glycodeoxycholic acid-d4 sodium
  • 3-Sulfo-glycodeoxycholic acid-d4 disodium
  • Glycodeoxycholic Acid
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Glycodeoxycholic acid-d4 is the deuterium labelled form of Glycodeoxycholic Acid. Glycodeoxycholic Acid is an endogenously produced metabolite.
Glycodeoxycholic acid-d4 (GDCA-d4; CAS: 1069132-37-1) is the deuterium-labeled form of glycodeoxycholic acid, a glycine-conjugated secondary bile acid. This stable isotope internal standard is labeled with four deuterium atoms (2,2,4,4-d4), providing a mass shift of +4 Da relative to unlabeled GDCA. It is intended for use as an internal standard for the quantification of glycodeoxycholic acid by GC-MS or LC-MS in biofluids and tissues for studies related to liver function, bile acid metabolism, and gastrointestinal health.
Biological Activity I Assay Protocols (From Reference)
Targets
Glycodeoxycholic acid-d4 has no independent pharmacological target as a stable isotope internal standard. The unlabeled glycodeoxycholic acid (GDCA) is a glycine-conjugated form of the secondary bile acid deoxycholic acid. Bile acids activate nuclear receptors (FXR, PXR, VDR) and TGR5 (a GPCR) to regulate lipid, glucose, and energy metabolism. GDCA induces a reversible, concentration-dependent reduction in myogenic tone in rats and decreases expression of CYP7A1 (the rate-limiting enzyme in bile acid synthesis). Elevated GDCA levels are associated with acetaminophen-induced acute liver failure (AALF) and asthma.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
As a stable isotope internal standard, Glycodeoxycholic acid-d4 is not tested for in vitro pharmacological activity. It is added to biological samples to enable accurate quantification of GDCA by LC-MS/MS or GC-MS. The deuterium labeling provides a distinct mass shift, allowing correction for matrix effects, extraction recovery, and instrument variability. GDCA is an important biomarker for liver disease and bile acid metabolism disorders, and the deuterated standard enables precise measurement of this biomarker in clinical and preclinical research.
ln Vivo
Glycodeoxycholic acid-d4 has no in vivo pharmacological activity as a therapeutic agent. It is used as an internal standard for quantifying GDCA in biological samples obtained from animal and human studies, including serum, plasma, urine, bile, and liver tissue homogenates. GDCA is a bile acid biomarker for acetaminophen-induced acute liver failure (AALF), non-alcoholic fatty liver disease (NAFLD), cirrhosis, and cholestasis. The deuterated standard enables accurate GDCA quantification for research on bile acid metabolism, enterohepatic circulation, and liver disease biomarkers.
Enzyme Assay
For in vitro LC-MS/MS or GC-MS quantification, Glycodeoxycholic acid-d4 is dissolved in an appropriate organic solvent (methanol, ethanol, or DMSO) to prepare a stock solution (e.g., 1 mg/mL). The internal standard is added to biological samples (serum, plasma, urine, bile, cell lysates, tissue homogenates) at a fixed concentration (e.g., 10-500 ng/mL). Lipid/bile acid extraction is performed by adding 3-5 volumes of methanol or acetonitrile containing the internal standard, vortexing, and centrifugation (10,000-15,000 rpm, 10 minutes). For more exhaustive extraction, liquid-liquid extraction with methyl tert-butyl ether (MTBE) or ethyl acetate may be used. The supernatant or organic layer is collected, evaporated under nitrogen, and reconstituted in mobile phase (typically water:acetonitrile with 0.1% formic acid or ammonium acetate). For GC-MS analysis, samples are derivatized to methyl esters or trimethylsilyl (TMS) derivatives. The GDCA/GDCA-d4 peak area ratio is used for quantification, correcting for matrix effects and extraction recovery.
Cell Assay
For cell-based studies, cells involved in bile acid metabolism (e.g., primary hepatocytes, HepG2 cells, Caco-2 intestinal cells, or cholangiocytes) are cultured in standard medium (DMEM or Williams' E medium with 10% FBS). For studies of bile acid transport, metabolism, or toxicity, cells are treated with bile acids (e.g., GDCA, deoxycholic acid, or chenodeoxycholic acid) at concentrations of 10-500 uM for 0-48 hours. Glycodeoxycholic acid-d4 is added to cell lysates or culture supernatants as an internal standard at a fixed concentration (e.g., 10-100 ng/mL). Following protein precipitation with methanol or acetonitrile and centrifugation, samples are analyzed by LC-MS/MS to quantify GDCA uptake, metabolism, or efflux. For bile acid transporter studies, the internal standard corrects for extraction and instrument variability across samples.
Animal Protocol
For in vivo pharmacokinetic or metabolomic studies, Glycodeoxycholic acid-d4 is not administered to animals independently. It is used as an internal standard for quantifying GDCA in biological samples obtained from animal models of liver disease (e.g., CCl4-induced liver fibrosis, bile duct ligation, acetaminophen overdose, or choline-deficient high-fat diet for NAFLD). After collection of serum, plasma, urine, or tissue homogenates (liver, ileum, bile), the internal standard is added at a fixed concentration (e.g., 10-500 ng/mL). Samples are processed by protein precipitation or liquid-liquid extraction, followed by centrifugation and LC-MS/MS or GC-MS analysis to determine absolute GDCA concentrations. For bile acid profiling studies, a mixture of deuterated bile acid internal standards (including GDCA-d4) is used.
ADME/Pharmacokinetics
Glycodeoxycholic acid-d4 is an internal standard and does not have independent pharmacokinetic parameters. GDCA is a secondary bile acid formed by bacterial deconjugation and 7alpha-dehydroxylation of primary bile acids (cholic acid) in the colon, followed by hepatic glycine conjugation. GDCA undergoes enterohepatic circulation, with approximately 95% reabsorbed in the ileum and returned to the liver. The pool size is 2-5 umol/kg body weight. Serum levels of GDCA are low in healthy subjects (<1 uM) but elevated in liver disease. The half-life of conjugated bile acids in the enterohepatic circulation is 2-4 hours. The deuterated version is used to calibrate analytical methods.
Toxicity/Toxicokinetics
Glycodeoxycholic acid is a secondary bile acid and is not acutely toxic at physiological levels. At elevated concentrations (>50-100 uM), bile acids are cytotoxic, causing oxidative stress, apoptosis, and necrosis. Elevated serum GDCA levels are associated with acetaminophen-induced acute liver failure (AALF) and are used as prognostic biomarkers. In animal studies, high-dose GDCA induces myogenic tone reduction and CYP7A1 downregulation. Standard laboratory safety precautions for handling bile acids (gloves, safety glasses, fume hood) apply. Not intended for human consumption.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

Additional Infomation
Glucose deoxycholic acid-2,2,4,4-d4 is a deuterated compound and also a glycodeoxycholic acid.
Glycodeoxycholic acid-d4 is not a drug but a deuterium-labeled stable isotope internal standard. It has no approved therapeutic status, no clinical trial history as a therapeutic agent, and is not intended for human consumption. This compound is used for research applications including as an internal standard for GC-MS or LC-MS quantification of glycodeoxycholic acid in biological samples, bile acid profiling in metabolomics and lipidomics studies, clinical biomarker research for acetaminophen-induced acute liver failure (AALF), non-alcoholic fatty liver disease (NAFLD), cirrhosis, cholestasis, and inflammatory bowel disease (IBD), and studies of enterohepatic circulation, bile acid metabolism, and liver function. GDCA-d4 is often used in combination with other deuterated bile acid internal standards for comprehensive bile acid profiling. Available with ≥95% purity, deuterium labeling at 2,2,4,4 positions (≥98 atom% D).
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C26H39D4NO5
Molecular Weight
453.65
Exact Mass
453.339
CAS #
1069132-37-1
Related CAS #
Glycodeoxycholic Acid;360-65-6
PubChem CID
71309868
Appearance
White to off-white solid powder
Density
1.2±0.1 g/cm3
Boiling Point
655.6±50.0 °C at 760 mmHg
Flash Point
350.3±30.1 °C
Vapour Pressure
0.0±4.5 mmHg at 25°C
Index of Refraction
1.546
LogP
3.53
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
6
Heavy Atom Count
32
Complexity
727
Defined Atom Stereocenter Count
10
SMILES
[2H]C1(C[C@]2([C@H](CC[C@@H]3[C@@H]2C[C@@H]([C@]4([C@H]3CC[C@@H]4[C@H](C)CCC(=O)NCC(=O)O)C)O)C([C@@H]1O)([2H])[2H])C)[2H]
InChi Key
WVULKSPCQVQLCU-JHVXYEQYSA-N
InChi Code
InChI=1S/C26H43NO5/c1-15(4-9-23(30)27-14-24(31)32)19-7-8-20-18-6-5-16-12-17(28)10-11-25(16,2)21(18)13-22(29)26(19,20)3/h15-22,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32)/t15-,16-,17-,18+,19-,20+,21+,22+,25+,26-/m1/s1/i10D2,12D2
Chemical Name
2-[[(4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-2,2,4,4-tetradeuterio-3,12-dihydroxy-10,13-dimethyl-3,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoyl]amino]acetic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2043 mL 11.0217 mL 22.0434 mL
5 mM 0.4409 mL 2.2043 mL 4.4087 mL
10 mM 0.2204 mL 1.1022 mL 2.2043 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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