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2′,2′-Difluorodeoxyuridine (dFdU; 2',2'-Difluoro-2'-deoxyuridine)

Cat No.:V72282 Purity: ≥98%
2′,2′-Difluorodeoxyuridine (dFdU) is the major metabolite of Gemcitabine .
2′,2′-Difluorodeoxyuridine (dFdU; 2',2'-Difluoro-2'-deoxyuridine)
2′,2′-Difluorodeoxyuridine (dFdU; 2',2'-Difluoro-2'-deoxyuridine) Chemical Structure CAS No.: 114248-23-6
Product category: Drug Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
250mg
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Other Forms of 2′,2′-Difluorodeoxyuridine (dFdU; 2',2'-Difluoro-2'-deoxyuridine):

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Top Publications Citing lnvivochem Products
Product Description
2′,2′-Difluorodeoxyuridine (dFdU) is the major metabolite of Gemcitabine . 2′,2′-Difluorodeoxyuridine induces concentration- and time-dependent radiosensitization effects in vitro.
2',2'-Difluorodeoxyuridine (dFdU) is a fluorinated pyrimidine 2'-deoxyribonucleoside analog and the primary deamination metabolite of the anticancer prodrug gemcitabine (dFdC). It exhibits intrinsic anticancer and antitumor activities, shows radiosensitization under hypoxic conditions, and is used to study pancreatic cancer.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of dFdU is thymidylate synthase (TS), which it inhibits competitively with a Ki of 130 µM. By inhibiting TS, dFdU interferes with DNA synthesis in rapidly dividing cells. It also causes cell cycle arrest at the early S phase and induces apoptosis in cancer cells.
ln Vitro
In vitro, dFdU causes concentration- and schedule-dependent radiosensitizing effects. It is a competitive inhibitor of thymidylate synthase (TS) with a Ki of 130 µM. It arrests the cell cycle at the early S phase and induces apoptosis in cancer cells. Its intracellular AUC₀₋₂₄ₕ is 17-fold higher than gemcitabine, enabling prolonged metabolite exposure studies.
ln Vivo
In vivo, dFdU is the major metabolite of gemcitabine with a distinct pharmacological profile. It exhibits anticancer and antitumor activities and shows radiosensitization under hypoxic conditions. It has minimal intrinsic cytotoxicity, enabling clean dissection of TS inhibition and DNA damage response without confounding cell death signals.
Enzyme Assay
In vitro enzyme assays for thymidylate synthase inhibition involve incubating TS with dFdU (1-1000 µM) and dUMP as substrate in buffer at pH 7.4. The reaction is monitored by measuring the formation of dTMP or the release of dihydrofolate. Ki values are determined from dose-response curves using Lineweaver-Burk or Dixon plot analysis.
Cell Assay
For in vitro cell assays, cancer cell lines are cultured and treated with dFdU at concentrations ranging from 0.1-100 µM. Cell viability is assessed by MTT or SRB assays. Cell cycle analysis is performed by flow cytometry. Radiosensitization is evaluated by exposing treated cells to ionizing radiation and measuring clonogenic survival. Apoptosis is assessed by Annexin V/PI staining.
Animal Protocol
For in vivo animal studies, dFdU is typically administered to rodents via oral gavage or intraperitoneal injection in tumor models. Antitumor efficacy is evaluated by measuring tumor growth inhibition. Radiosensitization is assessed by combining dFdU treatment with radiation therapy. Pharmacokinetic studies measure dFdU concentrations in plasma and tissues by LC-MS/MS.
ADME/Pharmacokinetics
2',2'-Difluorodeoxyuridine (MW 264.18) has the molecular formula C9H10F2N2O5. It is a white to off-white solid. The compound is stable under recommended storage conditions. As the primary metabolite of gemcitabine, it has a long intracellular half-life and accumulates to high concentrations. It is soluble in DMSO and other organic solvents.
Toxicity/Toxicokinetics
The compound is for research use only. No specific toxicity data are available. dFdU has minimal intrinsic cytotoxicity, making it a useful tool for studying TS inhibition and DNA damage response without confounding cell death signals. Standard laboratory safety precautions should be followed.
References

[1]. The radiosensitising effect of difluorodeoxyuridine, a metabolite of gemcitabine, in vitro. Cancer Chemother Pharmacol. 2006 Aug;58(2):219-28.

Additional Infomation
2',2'-Difluorodeoxyuridine is a pyrimidine 2'-deoxyribonucleoside.
2',2'-Difluorodeoxyuridine (CAS# 114248-23-6) is the primary deamination metabolite of the FDA-approved anticancer drug gemcitabine. It has not been approved as a standalone therapeutic agent but is widely used in cancer research, particularly for studying gemcitabine pharmacology, radiosensitization mechanisms, and TS inhibition. It is a valuable research tool for dissecting gemcitabine's complex pharmacology.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H10F2N2O5
Molecular Weight
264.18
Exact Mass
264.055
CAS #
114248-23-6
Related CAS #
2′,2′-Difluorodeoxyuridine-13C,15N2;1233921-75-9
PubChem CID
9871558
Appearance
White to off-white solid powder
Density
1.7±0.1 g/cm3
Melting Point
147-149ºC
Index of Refraction
1.587
LogP
-0.53
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
2
Heavy Atom Count
18
Complexity
414
Defined Atom Stereocenter Count
3
SMILES
C1=CN(C(=O)NC1=O)[C@H]2C([C@@H]([C@H](O2)CO)O)(F)F
InChi Key
FIRDBEQIJQERSE-QPPQHZFASA-N
InChi Code
InChI=1S/C9H10F2N2O5/c10-9(11)6(16)4(3-14)18-7(9)13-2-1-5(15)12-8(13)17/h1-2,4,6-7,14,16H,3H2,(H,12,15,17)/t4-,6-,7-/m1/s1
Chemical Name
1-[(2R,4R,5R)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.7853 mL 18.9265 mL 37.8530 mL
5 mM 0.7571 mL 3.7853 mL 7.5706 mL
10 mM 0.3785 mL 1.8926 mL 3.7853 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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