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Ziprasidone amino acid (Ziprasidone Impurity C; Ziprasidone open ring impurity)

Cat No.:V71202 Purity: ≥98%
Ziprasidone amino acid (AA) (Ziprasidone Impurity C) is an impurity of Ziprasidone.
Ziprasidone amino acid (Ziprasidone Impurity C; Ziprasidone open ring impurity)
Ziprasidone amino acid (Ziprasidone Impurity C; Ziprasidone open ring impurity) Chemical Structure CAS No.: 1159977-64-6
Product category: 5-HT Receptor
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes
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Product Description
Ziprasidone amino acid (AA) (Ziprasidone Impurity C) is an impurity of Ziprasidone. Ziprasidone is a 5-HT and dopamine receptor antagonist (inhibitor) with antipsychotic activity.
Ziprasidone amino acid (Ziprasidone Impurity C; Ziprasidone open ring impurity) is an impurity found in the drug substance Ziprasidone, functioning as a combined 5-HT (serotonin) and dopamine receptor antagonist. It demonstrates significant antipsychotic activity as a reference standard for pharmaceutical quality control.
Biological Activity I Assay Protocols (From Reference)
Targets
5-HT receptor (antagonist); Dopamine receptor (antagonist)
ln Vitro
No specific in vitro assays for the impurity are provided. The non-degraded parent compound Ziprasidone is a combined 5-HT and dopamine receptor antagonist. Ziprasidone exhibits potent effects of antipsychotic activity by blocking serotonin 5-HT2A and dopamine D2 receptors. The amino acid open-ring impurity is less potent as a degradation product.
ln Vivo
Cellular activity data for the impurity are not specifically reported. The non-degraded Ziprasidone shows antagonist activity at 5-HT2A and dopamine D2 receptors in cell-based functional assays, inhibiting receptor-mediated signaling pathways including calcium mobilization and cAMP modulation, contributing to its antipsychotic efficacy.
Enzyme Assay
Standard radioligand binding assays are performed using membrane preparations from cells expressing human 5-HT2A or dopamine D2 receptors. [3H]-Ketanserin is used for 5-HT2A binding and [3H]-Spiperone for D2 binding. The test compound (Ziprasidone amino acid impurity) is incubated with membranes at varying concentrations. Bound radioligand is separated by filtration and counted by scintillation. Ki values are calculated via competition curves.
Cell Assay
Cell-based functional antagonist assays for 5-HT2A receptor are performed using HEK-293 cells stably expressing the receptor. Cells are loaded with calcium-sensitive fluorescent dye and treated with serial dilutions of the impurity. 5-HT (serotonin) is added to activate the receptor, and intracellular calcium increase is measured by fluorescence. Antagonist potency (IC50) is determined relative to Ziprasidone reference standard.
Animal Protocol
In vivo animal studies with the impurity are not typically performed as it serves as a reference standard for quality control rather than a therapeutic agent. Pharmacokinetic studies of Ziprasidone involve oral administration to rats or dogs, with blood and brain tissue collected at multiple time points. The impurity may be monitored as a degradation product in stability studies.
ADME/Pharmacokinetics
As an impurity reference standard, the compound is not intended for pharmacokinetic characterization in vivo. Analytical quantification of this impurity in Ziprasidone drug substance is performed by HPLC or LC-MS/MS using a validated method. It serves as a quality control marker to ensure pharmaceutical product purity and stability.
Toxicity/Toxicokinetics
As a reference standard for pharmaceutical analysis, Ziprasidone amino acid is not intended for therapeutic use and thus toxicology studies are not performed on this impurity. The parent drug Ziprasidone has an established clinical safety profile as an approved antipsychotic for schizophrenia and bipolar disorder, with known side effects including QT prolongation.
References
[1]. T F Seeger, et al. Ziprasidone (CP-88,059): a new antipsychotic with combined dopamine and serotonin receptor antagonist activity. J Pharmacol Exp Ther. 1995 Oct;275(1):101-13.
Additional Infomation
Ziprasidone amino acid (Ziprasidone Impurity C) is an open-ring degradant formed under stress conditions. As a reference standard, it is critical for regulatory compliance in pharmaceutical manufacturing, ensuring that Ziprasidone drug product meets ICH guidelines for impurity limits. The parent drug Ziprasidone was first approved by the FDA in 2001.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H23CLN4O2S
Molecular Weight
430.95
Exact Mass
430.123
CAS #
1159977-64-6
PubChem CID
46783272
Appearance
Off-white to light yellow solid powder
LogP
4.107
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
6
Heavy Atom Count
29
Complexity
563
Defined Atom Stereocenter Count
0
SMILES
C1CN(CCN1CCC2=CC(=C(C=C2Cl)N)CC(=O)O)C3=NSC4=CC=CC=C43
InChi Key
VMQKWKNTSXIWGW-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H23ClN4O2S/c22-17-13-18(23)15(12-20(27)28)11-14(17)5-6-25-7-9-26(10-8-25)21-16-3-1-2-4-19(16)29-24-21/h1-4,11,13H,5-10,12,23H2,(H,27,28)
Chemical Name
2-[2-amino-5-[2-[4-(1,2-benzothiazol-3-yl)piperazin-1-yl]ethyl]-4-chlorophenyl]acetic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O: 20.83 mg/mL (48.34 mM)
DMSO: 4.81 mg/mL (11.16 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3205 mL 11.6023 mL 23.2045 mL
5 mM 0.4641 mL 2.3205 mL 4.6409 mL
10 mM 0.2320 mL 1.1602 mL 2.3205 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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