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Casein kinase 1δ-IN-3

Cat No.:V69792 Purity: ≥98%
Casein kinase 1δ-IN-3 (Compound 23a) is a casein kinase 1δ (CK1d) inhibitor (antagonist) with pIC50 of 6.5376 M.
Casein kinase 1δ-IN-3
Casein kinase 1δ-IN-3 Chemical Structure CAS No.: 349438-77-3
Product category: Casein Kinase
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Casein kinase 1δ-IN-3 (Compound 23a) is a casein kinase 1δ (CK1d) inhibitor (antagonist) with pIC50 of 6.5376 M.
Casein kinase 1δ-IN-3 (CAS 349438-77-3) is an inhibitor of casein kinase 1 delta (CK1δ) with a pIC50 of 6.5376 M. The compound is also known as Compound 23a. It has a molecular weight of 312.39 g/mol and a molecular formula of C17H16N2O2S. It is used in research to study the role of CK1δ in various diseases, including amyotrophic lateral sclerosis (ALS) and other neurodegenerative disorders.
Biological Activity I Assay Protocols (From Reference)
Targets
CKIδ 6.5376 M (pIC50)
Casein kinase 1δ-IN-3 targets casein kinase 1 delta (CK1δ), a serine/threonine protein kinase involved in various cellular processes including circadian rhythm regulation, Wnt signaling, and neurodegenerative disease pathogenesis. CK1δ has been implicated in the pathogenesis of amyotrophic lateral sclerosis (ALS) and other neurodegenerative disorders. The compound has a pIC50 of 6.5376 M for CK1δ.
ln Vitro
Casein kinase 1δ-IN-3 demonstrates in vitro activity against CK1δ with a pIC50 of 6.5376 M. It is a small molecule inhibitor that binds to CK1δ and inhibits its kinase activity. The compound has been identified through computer-aided scaffold hopping studies aimed at identifying novel CK1δ inhibitors for the treatment of amyotrophic lateral sclerosis. Further in vitro studies are needed to fully characterize its potency and selectivity.
ln Vivo
In vivo activity data for Casein kinase 1δ-IN-3 are not extensively documented in the available literature. As a CK1δ inhibitor, it is expected to exhibit activity in animal models of neurodegenerative diseases such as amyotrophic lateral sclerosis. Comprehensive in vivo studies are needed to evaluate its efficacy, pharmacokinetics, and safety profile.
Enzyme Assay
The in vitro enzyme/receptor binding (non-cell-based) assay for Casein kinase 1δ-IN-3 involves assessing its inhibition of CK1δ kinase activity. Recombinant CK1δ is incubated with the compound, ATP, and a substrate peptide. Kinase activity is measured by detecting phosphorylated substrate using techniques such as radiometric assays or fluorescence-based assays. The pIC50 value of 6.5376 M is determined from dose-response curves.
Cell Assay
The in vitro cell-based assay for Casein kinase 1δ-IN-3 involves treating cells with the compound and measuring CK1δ-dependent signaling and functional responses. Cells expressing CK1δ are treated with the compound, and downstream phosphorylation of CK1δ substrates is assessed by Western blotting or ELISA. Cellular effects related to neurodegenerative disease pathogenesis, such as changes in protein aggregation or cell survival, may also be measured.
Animal Protocol
In vivo animal experiments for Casein kinase 1δ-IN-3 are conducted in models of neurodegenerative diseases such as amyotrophic lateral sclerosis. Animals are administered the compound via appropriate routes, and disease progression is monitored through behavioral tests, histopathological analysis, and measurement of neuroinflammatory and neurodegenerative markers. The compound’s ability to inhibit CK1δ and modify disease progression is assessed.
ADME/Pharmacokinetics
Detailed pharmacokinetic properties of Casein kinase 1δ-IN-3 are not extensively reported. The compound has a molecular weight of 312.39 g/mol and a molecular formula of C17H16N2O2S. It is soluble in DMSO (62.5 mg/mL, 200.07 mM). The compound is typically stored at -20°C and shipped with an ice pack. Further pharmacokinetic studies are needed to determine its half-life and bioavailability.
Toxicity/Toxicokinetics
Toxicological data for Casein kinase 1δ-IN-3 are not extensively documented. As a research compound, its safety profile is evaluated in standard cytotoxicity and acute toxicity assays. The compound is classified for research use only and is not intended for human therapeutic use. Comprehensive toxicological characterization would be required prior to any clinical development.
References

[1]. Computer-aided scaffold hopping to identify a novel series of casein kinase 1 delta (CK1d) inhibitors for amyotrophic lateral sclerosis. Eur J Pharm Sci. 2015 Oct 12;78:151-62.

Additional Infomation
Casein kinase 1δ-IN-3 (CAS 349438-77-3) is an inhibitor of casein kinase 1 delta (CK1δ) with a pIC50 of 6.5376 M. It has a molecular weight of 312.39 g/mol and a formula of C17H16N2O2S. The compound is also known as Compound 23a. It is used in research on neurodegenerative diseases including amyotrophic lateral sclerosis. It is not approved for clinical use and is available only for research purposes. Purity is >98%.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H16N2O2S
Molecular Weight
312.39
Exact Mass
312.093
CAS #
349438-77-3
PubChem CID
670753
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Index of Refraction
1.680
LogP
3.99
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
4
Heavy Atom Count
22
Complexity
393
Defined Atom Stereocenter Count
0
SMILES
CC1=CC2=C(C=C1)N=C(S2)NC(=O)CC3=CC=CC=C3OC
InChi Key
GSEJFQATWFVODO-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H16N2O2S/c1-11-7-8-13-15(9-11)22-17(18-13)19-16(20)10-12-5-3-4-6-14(12)21-2/h3-9H,10H2,1-2H3,(H,18,19,20)
Chemical Name
2-(2-methoxyphenyl)-N-(6-methyl-1,3-benzothiazol-2-yl)acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 62.5 mg/mL (200.07 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.2011 mL 16.0056 mL 32.0113 mL
5 mM 0.6402 mL 3.2011 mL 6.4023 mL
10 mM 0.3201 mL 1.6006 mL 3.2011 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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