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YZ-836P

Cat No.:V147276 Purity: ≥98%
YZ-836P is a drug that targets the protein arginine methyltransferase 5 (PRMT5).
YZ-836P
YZ-836P Chemical Structure CAS No.: 3086041-35-9
Product category: KLF
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
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Product Description
YZ-836P is a drug targeting the protein arginine methyltransferase 5 (PRMT5). YZ-836P promotes PRMT5 ubiquitination and proteasome degradation in a cereblon (CRBN)-dependent manner, thereby reducing the level of its downstream target, KLF5. YZ-836P induces G1 phase cell cycle arrest in triple-negative breast cancer cells. YZ-836P induces apoptosis in triple-negative breast cancer cells. YZ-836P exhibits cytotoxic effects on triple-negative breast cancer cells. YZ-836P inhibits the growth of organoids derived from triple-negative breast cancer patients. YZ-836P inhibits the growth of triple-negative breast cancer xenografts in nude mice. YZ-836P can be used for research on triple-negative breast cancer. (Pink: PRMT5 ligand; Blue: Cereblon ligand; Black: linker).
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Treatment with YZ-836P (0–6 µM; 48 h) for 48 hours significantly reduced cell viability in HCC1806 (IC50 = 2.1 µM) and HCC1937 (IC50 = 1.0 µM) triple-negative breast cancer (TNBC) cell lines [1]. YZ-836P (0–10 µM; 48 h) and (4 µM; 0–72 h) reduced the expression levels of PRMT5 and KLF5 proteins in HCC1806 and HCC1937 TNBC cell lines in a dose- and time-dependent manner [1]. YZ-836P (0.25–1.00 µM; 2 days) inhibited colony formation in HCC1806 and HCC1937 TNBC cell lines in a concentration-dependent manner after an initial 2-day treatment [1]. YZ-836P (1–6 µM; 24 h) concentration-dependently inhibited DNA synthesis in HCC1806 and HCC1937 triple-negative breast cancer (TNBC) cell lines [1]. YZ-836P (2–6 µM; 48 h) concentration-dependently induced G1 phase cell cycle arrest in HCC1806 and HCC1937 TNBC cell lines [1]. YZ-836P (2–6 µM; 48 h) concentration-dependently regulated the expression of cell cycle-related proteins in HCC1806 and HCC1937 TNBC cell lines (decreased the expression of Cyclin D1, CDK4, and CDK6; increased the expression of p21 and p27) [1]. YZ-836P (2–6 µM; 48 h) concentration-dependently modulates the expression of apoptosis-related proteins in HCC1806 and HCC1937 triple-negative breast cancer (TNBC) cell lines (increasing the expression of cleaved PARP and cleaved Caspase 3; decreasing the expression of XIAP and Mcl-1) [1]. YZ-836P (2–6 µM; 48 h) concentration-dependently induces apoptosis in HCC1806 and HCC1937 TNBC cell lines [1]. YZ-836P (4 µM) directly binds to PRMT5, increasing its thermostability (CETSA assay) and decreasing its sensitivity to protease degradation (DARTS assay) [1]. YZ-836P (4 µM; 48 h) increases PRMT5 ubiquitination in HEK293T cells and promotes CRBN-dependent proteasome-mediated PRMT5 degradation [1]. Treatment with YZ-836P (0-10 µM; 48 hours) for 48 hours significantly reduced the viability of PDO-32 (IC50 = 2.072 µM) and PDO-33 (IC50 = 4.746 µM) organoids derived from TNBC patients [1].
ln Vivo
YZ-836P (50 mg/kg; intraperitoneal injection; once every other day; for a total of 4 times) has strong in vivo antitumor activity against TNBC xenografts, can reduce tumor growth, and does not cause measurable systemic toxicity [1].
Cell Assay
Cell viability assay [1]
Cell Types: HCC1806, HCC1937 triple-negative breast cancer (TNBC) cell lines
Tested Concentrations: 0, 2, 4, 6 µM
Incubation Duration: 48 hours
Experimental Results: Significantly reduced the viability of HCC1806 and HCC1937 cells. The IC50 value was 2.1 µM in HCC1806 cells and 1.0 µM in HCC1937 cells.
Western Blot Analysis [1]
Cell Types: HCC1806, HCC1937 Triple Negative Breast Cancer (TNBC) Cell Lines
Tested Concentrations: 0, 2, 4, 6, 8, 10 µM (concentration-dependent); 4 µM (time-dependent)
Incubation Duration: 48 h (concentration-dependent); 0, 6, 12, 24, 48, 72 h (time-dependent)
Experimental Results: Protein levels of PRMT5 and its downstream target KLF5 were significantly reduced in both cell lines. The reduction was concentration-dependent (0-10 µM, 48 h) and time-dependent (4 µM, 0-72 h). The protein level reduction could be detected as early as 6 h.
Western Blot Analysis [1]
Cell Types: HCC1806, HCC1937 triple-negative breast cancer cell lines
Tested Concentrations: 0, 2, 4, 6 µM
Incubation Duration: 48 hours
Experimental Results: Concentration-dependently decreased the protein levels of Cyclin D1, CDK4, and CDK6 in both cell lines, and increased the levels of p21 and p27. Concentration-dependently promoted the increase of cleaved PARP and cleaved Caspase 3, and decreased the levels of the anti-apoptotic proteins XIAP and Mcl-1 in both cell lines.
Animal Protocol
Animal/Disease Models:Nude mice (approximately 6 weeks old) [1]
Doses: 50 mg/kg
Route of Administration: Intraperitoneal injection; once every other day; for a total of 4 times
Experimental Results: Compared with the control group, tumor volume and weight were significantly reduced. The proportion of lysing Caspase 3 positive cells in the tumor tissue was significantly increased. Compared with the control group, there were no significant changes in mouse body weight, serum creatinine, alanine aminotransferase, or aspartate aminotransferase levels.
References

[1]. Targeting PRMT5 through PROTAC for the treatment of triple-negative breast cancer. J Exp Clin Cancer Res. 2024;43(1):314. Published 2024 Nov 30.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C45H57N9O7
Molecular Weight
835.99
CAS #
3086041-35-9
Appearance
Typically exists as solids at room temperature
SMILES
O=C1N(C2C(NC(CC2)=O)=O)C(C3=CC=C(NCCCCCCCCCC(N4CCC(CC4)NC5=NC=NC(C(NC[C@H](O)CN6CC7=CC=CC=C7CC6)=O)=C5)=O)C=C31)=O
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1962 mL 5.9809 mL 11.9619 mL
5 mM 0.2392 mL 1.1962 mL 2.3924 mL
10 mM 0.1196 mL 0.5981 mL 1.1962 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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