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WMJ-J-09

Cat No.:V147125 Purity: ≥98%
WMJ-J-09 is an HDAC inhibitor with IC50 values of: HDAC1 7.5 nM, HDAC2 21.3 nM, HDAC3 18.4 nM, HDAC8 90.9 nM, HDAC6 3.9 nM, and HDAC4 8715.7 nM.
WMJ-J-09
WMJ-J-09 Chemical Structure CAS No.: 2416914-29-7
Product category: Survivin
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
WMJ-J-09 is an HDAC inhibitor with IC50 values of 7.5 nM for HDAC1, 21.3 nM for HDAC2, 18.4 nM for HDAC3, 90.9 nM for HDAC8, 3.9 nM for HDAC6, and 8715.7 nM for HDAC4. WMJ-J-09 can block the cell cycle and induce apoptosis in cancer cells. WMJ-J-09 induces cancer cell death through the LKB1-AMPK-p38MAPK-p63-survivin signaling pathway. WMJ-J-09 inhibits HDAC enzyme activity, leading to acetylation of key proteins, thereby regulating cancer cell death. WMJ-J-09 can be used for research on HCT116 cells and FaDu cells [1][2].
Biological Activity I Assay Protocols (From Reference)
ln Vitro
WMJ-J-09 (compound WMJ-J-09) (0-10 μM, 48 h, CRC cells) (0-20 μM, 72 h, HNSCC cells) selectively kills cancer cells in a concentration- and time-dependent manner, and has no significant toxicity to non-tumor FHC cells [1][2]. WMJ-J-09 (5 μM, 24 h, HCT116 cells) (10 μM, 48 h, FaDu cells) can arrest the cell cycle of cancer cells at the G2/M phase and induce apoptosis [1][2]. WMJ-J-09 (5 μM, 24 h, HCT116 cells) (10 μM, 24 h, FaDu cells) can disrupt microtubule assembly [1][2]. WMJ-J-09 (5 μM, 6-24 h, HCT116 cells) (10 μM, 24 h, FaDu cells) inhibits survivin at the transcriptional level [1][2]. WMJ-J-09 (0-10 μM, 24 h, HCT116 cells) (0-20 μM, 48 h, FaDu cells) modulates signaling pathways in cancer cells, inhibits HDACs to regulate key proteins, and promotes cancer cell apoptosis [1][2].
ln Vivo
WMJ-J-09 (compound WMJ-J-09) (20 mg/kg, intraperitoneal injection, once daily for 19 days) inhibits CRC tumor growth by inhibiting cancer cell proliferation and is well tolerated in the HCT116 xenograft mouse model [1]. WMJ-J-09 (20 mg/kg, intraperitoneal injection, once daily for 23 days) inhibits the growth of HNSCC xenografts and has good safety [2].
Cell Assay
Cell viability assay [1][2]
Cell Types: HCT116 cells, FHC cells; FaDu cells, SCC9 cells, SCC25 cells
Tested Concentrations: 0.1 μM, 0.5 μM, 1 μM, 2.5 μM, 5 μM, 10 μM (HCT116 cells, FHC cells); 0.5 μM, 1 μM, 2.5 μM, 5 μM, 10 μM, 20 μM (FaDu cells, SCC9 cells, SCC25 cells)
Incubation Duration: 48 hours (HCT116 cells, FHC cells); 72 hours (FaDu cells, SCC9 cells, SCC25 cells)
Experimental Results: Reduced CRC cell viability (significant inhibitory effect at 10 μM, IC50 approximately 5) The inhibitory effect on cell viability was strongest at 10 μM, with the survival rate of FaDu cells decreasing to approximately 30% after 72 hours of treatment with 20 μM.
Apoptosis Analysis [1][2]
Cell Types: HCT116 cells; FaDu cells
Tested Concentrations: 5 μM (HCT116 cells); 10 μM (FaDu cells)
Incubation Duration: 24 h (HCT116 cells); 48 h (FaDu cells)
Experimental Results: The proportion of early apoptotic cells (left quadrant) and late apoptotic cells (right quadrant) increased. The cleaved caspase-3 and PARP fragments increased. The proportion of sub-G1 phase cells (apoptotic cells) increased significantly, reaching approximately 40% at a concentration of 20 μM.
Cell cycle analysis [1][2]
Cell Types: HCT116 cells; FaDu cells
Tested Concentrations: 5 μM (HCT116 cells); 0.1 μM, 0.5 μM, 1 μM, 2.5 μM, 5 μM, 10 μM, 20 μM (FaDu cells)
Incubation Duration: 24 hours
Experimental Results: Decreased the proportion of cells in S phase and increased the proportion of cells in G2/M phase and sub-G1 phase (peak of apoptosis). Increased the proportion of cells in G2/M phase (from 12% to 28% at 10 μM) and decreased the number of cells in S phase.
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Immunofluorescence [1][2]
Cell Types: HCT116 cells; FaDu cells
Tested Concentrations: 5 μM (HCT116 cells); 10 μM (FaDu cells)
Incubation Duration: 24 hours
Experimental Results: The cytoskeleton was disrupted by α-tubulin acetylation.
RT-PCR[1][2]
Cell Types: HCT116 cells; FaDu cells
Tested Concentrations: 5 μM (HCT116 cells); 10 μM (FaDu cells)
Incubation Duration: 6-24 hours (HCT116 cells); 6 hours (FaDu cells)
Experimental Results: Inhibited survivin expression at the transcriptional level.
Western Blot Analysis [1][2]
Cell Types: HCT116 cells, HCT116 p53-/- cells, HCT116-p53 wild-type cells; FaDu cells
Tested Concentrations: 0.1 μM, 0.5 μM, 1 μM, 2.5 μM, 5 μM, 10 μM (HCT116 cells, HCT116 p53-/- cells, HCT116-p53 wild-type cells); 2.5 μM, 5 μM, 10 μM, 20 μM (FaDu cells)
Incubation Duration: 24 hours (HCT116 cells, HCT116 p53-/- cells, HCT116-p53 wild-type cells); 48 hours (FaDu cells)
Experimental Results:
Increased p21 protein, acetylation, and phosphorylation of p53, decreased survivin protein, and increased α-tubulin acetylation. Phosphorylation activation of the LKB1/p38MAPK pathway. Survivin acetylation and degradation in the proteasome. Significantly increased p21 protein, while decreased cyclin D1 and survivin protein. Phosphorylation levels of LKB1 (Ser 428), AMPK (Thr 172), p38MAPK (Thr 180/Tyr 182), and p63 (Ser 160/162) increased over time, and cleaved caspase-3 and PARP (apoptosis markers) increased.

Animal Protocol
Animal/Disease Models:A male nude mouse xenograft model of HCT116 was established (4 weeks) [1].
Doses: 20 mg/kg
Route of Administration: Intraperitoneal injection (ip) daily for 19 consecutive days, with the same dosage as the control group.
Experimental Results: Tumor growth was inhibited; tumor volume and weight were significantly lower than the control group. Tumor proliferation was inhibited, as evidenced by reduced Ki67 immunohistochemical staining within the tumor. Low toxicity; no significant change in mouse body weight.
Animal/Disease Models:A Dafu xenograft tumor model was established in male nude mice (4 weeks, 25g) [2].
Doses: 20 mg/kg
Route of Administration: Intraperitoneal injection (ip) daily for 23 consecutive days.
Experimental Results: Significantly inhibited tumor growth; the average tumor weight in the treatment group was lower than that in the control group. Low toxicity; no significant change in mouse body weight.
References

[1]. The hydroxamate based HDAC inhibitor WMJ-J-09 induces

[2]. A Novel Hydroxamate-Based Compound WMJ-J-09 Causes Head and Neck Squamous Cell Carcinoma Cell Death via LKB1-AMPK-p38MAPK-p63-Survivin Cascade. Front Pharmacol. 2018 Mar 1. 9:167.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H27N3O5S
Molecular Weight
445.53
CAS #
2416914-29-7
Appearance
White to off-white solid
SMILES
O=C(NO)CCCCCCC(NC1=CC(N(S(C2=CC=CC=C2)(=O)=O)CC3)=C3C=C1)=O
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~561.13 mM; with sonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2445 mL 11.2226 mL 22.4452 mL
5 mM 0.4489 mL 2.2445 mL 4.4890 mL
10 mM 0.2245 mL 1.1223 mL 2.2445 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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