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Sim-9

Cat No.:V144946 Purity: ≥98%
Sim-9 is a covalent allosteric inhibitor of interferon regulator 3 (IRF3).
Sim-9
Sim-9 Chemical Structure CAS No.: 3099101-40-0
Product category: STING
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes
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Product Description
Sim-9 is a covalent allosteric inhibitor of interferon regulator 3 (IRF3). Sim-9 covalently binds to the Cys222 residue of IRF3, inducing a conformational change that blocks its interactions with TRIF, MAVS, and STING, and inhibits IRF3 homodimerization and type I interferon responses. In mouse models of sepsis and acute pancreatitis, Sim-9 exhibits significant anti-inflammatory, organ-protective, and survival-enhancing effects. Sim-9 can be used for research related to inflammatory diseases.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Sim-9 (2.5–10 μM) dose-dependently inhibited the interferon response induced by TLR/RLR/STING activation in mouse RAW264.7 cells and human THP-1/HT-29/A549 cells [1]. Sim-9 (5 μM; 0.5–6 h) inhibited IRF3 phosphorylation activated by the cGAS-STING, TLR3, or RIG-I pathways in mouse RAW264.7 cells without affecting TBK1 phosphorylation [1]. Sim-9 (5 μM) inhibited IRF3 homodimerization activated by the cGAS-STING, TLR3, or RIG-I pathways in mouse RAW264.7 cells [1].
ln Vivo
Sim-9 (30-60 mg/kg; intraperitoneal injection; single injection) has shown protective and anti-inflammatory activity in a mouse sepsis model [1]. Sim-9 (30-60 mg/kg; intraperitoneal injection; single injection/triple injection) improved pancreatic edema and inflammatory marker levels in a mouse model of acute pancreatitis [1].
Cell Assay
Western Blot Analysis [1]
Cell Types: Mouse RAW264.7 cells
Tested Concentrations: 5 μM
Incubation Duration: 0.5, 1, 2, 4, 6 hours
Experimental Results: Phosphorylated IRF3 levels decreased significantly starting 1 hour after stimulation, with the inhibitory effect lasting up to 6 hours. It had no effect on phosphorylated or total TBK1 protein levels.
Animal Protocol
Animal/Disease Models:C57BL/6J mice (8-week-old males, weighing 0.022-0.024 kg, sepsis induced by cecal ligation and puncture) [1]
Doses: 30 mg/kg; 60 mg/kg
Route of Administration: Intraperitoneal injection; single injection 2 hours before surgery
Experimental Results: The mortality rate of sepsis induced by cecal ligation and puncture was reduced to 60% and 80%, respectively. Survival rate was significantly improved. Systemic inflammatory response was inhibited and IRF3-mediated inflammatory damage in the kidney and lung tissues was reduced.
Animal/Disease Models:C57BL/6J mice (8-week-old males, 0.022–0.024 kg, acute pancreatitis induced by secretin) [1]
Doses: 30 mg/kg; 60 mg/kg
Route of Administration: Intraperitoneal injection; 1 hour before the first injection of secretin (acute phase); 3 injections in total: 1 hour before the first injection of secretin, 24 hours after the first injection of secretin, and 48 hours after the first injection of secretin (recovery phase)
Experimental Results: Both doses significantly reduced pancreatic edema, pancreatic weight, and serum amylase and lipase levels during the acute phase. Both doses improved pancreatic histology during the acute phase (reducing acinar cell edema, necrosis, and immune cell infiltration). Both doses significantly reduced serum amylase and lipase levels during the recovery phase. Both doses improved pancreatic histology during the recovery period (reducing acinar cell necrosis and acinar-ductal metaplasia). Both doses reduced p-IRF3 staining in pancreatic tissue during the recovery period. Both doses reduced CD11b-IRF7 colocalization in pancreatic tissue during the recovery period.
References

[1]. A sinomenine derivative protects life-threatening inflammatory injuries via covalently binding to a novel allosteric inhibition site of IRF3. Acta Pharmacol Sin. Published online January 16, 2026.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C31H28F3NO6
Molecular Weight
567.55
CAS #
3099101-40-0
Appearance
Typically exists as solids at room temperature
SMILES
O=C(C1=CC=C(C2=CC=C(C=C2)C(F)(F)F)O1)OC3=C4[C@]56[C@@](C=C(C(C6)=O)OC)([H])[C@](N(CC5)C)([H])CC4=CC=C3OC
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7620 mL 8.8098 mL 17.6196 mL
5 mM 0.3524 mL 1.7620 mL 3.5239 mL
10 mM 0.1762 mL 0.8810 mL 1.7620 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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