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PROTAC FTO degrader 1

PROTAC FTO Degrader 1 is a PROTAC degrader that can degrade fat mass and obesity-related protein (FTO).
PROTAC FTO degrader 1
PROTAC FTO degrader 1 Chemical Structure Product category: FTO
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
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Product Description
PROTAC FTO degrader 1 is a PROTAC degrader of fat mass and obesity-related protein (FTO). PROTAC FTO degrader 1 selectively degrades FTO using VHL E3 ligase and the ubiquitin-proteasome system. PROTAC FTO degrader 1 increases m6A modifications on mRNAs associated with ribosomal biogenesis and promotes their degradation mediated by YTHDF2. PROTAC FTO degrader 1 inhibits cancer cell proliferation and induces apoptosis. PROTAC FTO degrader 1 can be used in cancer research, such as for acute myeloid leukemia (AML). (Structure: Pink: FTO ligand; Blue: VHL ligase ligand; Black: Linker; VHL ligand-Linker)
Biological Activity I Assay Protocols (From Reference)
ln Vitro
PROTAC FTO degrader 1 (Compound FP54) (0.08-2.5 μM, 48 h) degraded FTO in NB4 and MOLM-13 cells in a dose-dependent manner, with a maximum degradation rate >95%[1]. PROTAC FTO degrader 1 inhibited the proliferation of various acute myeloid leukemia cell lines, with IC50 values of 0.48-2.44 μM[1]. PROTAC FTO degrader 1 (2-5 μM, 48 h) significantly induced apoptosis in MOLM-13 and NB4 cells[1]. PROTAC FTO degrader 1 (5 μM) promoted the differentiation of MOLM-13 cells[1]. PROTAC FTO degrader 1 (2 μM, 48 h) increased the overall m6A modification level of mRNA in NB4 cells[1]. PROTAC FTO degrader 1 (2 μM, 48 h) reduced the multiribosome/80S monoribosome ratio in MOLM-13 cells and inhibited overall translation [1]. PROTAC FTO degrader 1 (2 μM) enriched the ribosomal biochemistry-related mRNAs MRPL36 and LYAR in YTHDF2 in MOLM-13 cells, reduced their mRNA stability, and promoted YTHDF2-mediated degradation [1].
ln Vivo
PROTAC FTO degrader 1 (Compound FP54) (25 mg/kg, intravenous injection, 3 times a week) delayed disease prediction in tumors in MA9.3Ras/MOLM13/AML-0148 mice and prolonged their survival [1].
Cell Assay
Apoptosis Analysis[1]
Cell Types: MOLM-13 and NB4 cells
Tested Concentrations: 2 and 5 μM
Incubation Duration: 48 h
Experimental Results: Increased apoptotic cells. Induced cleavage of caspase-3 and PARP1.
Animal Protocol
Animal/Disease Models: MA9.3Ras/ MOLM13/AML-0148 tumor mice models[1]
Doses: 25 mg/kg
Route of Administration: Intraperitoneally injection, 3 times a week
Experimental Results: Reduced AML cell engraftment in peripheral blood and bone marrow. Decreased leukemia burden and delayed disease onset. Prolonged survival. Showed no obvious toxicity to mouse body weight, blood routine, or major organs.
References

[1]. https://pubmed.ncbi.nlm.nih.gov/40815637/

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C59H75CL2N9O10S
Molecular Weight
1173.25
Appearance
Typically exists as solids at room temperature
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.8523 mL 4.2617 mL 8.5233 mL
5 mM 0.1705 mL 0.8523 mL 1.7047 mL
10 mM 0.0852 mL 0.4262 mL 0.8523 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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