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DI-1548

DI-1548 is a potent, selective, and irreversible covalent inhibitor of DCN1 (IC50 = 4.6 nM).
DI-1548
DI-1548 Chemical Structure CAS No.: 2247060-97-3
Product category: E1 E2 E3 Enzyme
This product is for research use only, not for human use. We do not sell to patients.
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500mg
1g
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Product Description
DI-1548 is a potent, selective, and irreversible covalent inhibitor of DCN1 (IC50 = 4.6 nM). DI-1548 potently and selectively inhibits neddylation of Cullin 3 at nanomolar concentrations, with no significant effect on the neddylation of other Cullin proteins (including Cullin 1, 2, 4A, 4B, and 5), and is non-cytotoxic. The covalent binding of DI-1548 to DCN1 disrupts the DCN1-UBC12 interaction, leading to the disintegration of the neddylation complex, which in turn inactivates CRL3, ultimately resulting in NRF2 accumulation and upregulation of its target genes, thus providing liver protection in mouse models. DI-1548 can be used in studies related to liver injury.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
DI-1548 (1-1000 nM, 24 hours) inhibited neddylation of cullin 3 in U2OS cells at concentrations as low as 1 nM, with an efficacy approximately 1000 times stronger than DI-591 [1]. DI-1548 (0.3-1000 nM, 24 hours) inhibited neddylation of cullin 3 in various cell lines (including U2OS, MDA-MB-231, KYSE70, and HCT116) and showed selectivity of more than 1000 times for other cullin protein members [1]. DI-1548 (0-1000 nM, 72 hours) showed no cytotoxicity to U2OS, MDA-MB-231, HCT116, and KYSE70 cells at concentrations up to 1000 nM [1]. DI-1548 (30 nM, 0-48 h) can rapidly and persistently selectively inhibit neddylation modification of Cullin 3 (but not Cullin 1)[1]. DI-1548 (0.3-1000 nM, 1 h) selectively and potently stabilizes intracellular DCN1 protein in a dose-dependent manner at nanomolar concentrations, with no significant effect on DCN3[1].
ln Vivo
DI-1548 (25 mg/kg, intraperitoneal injection, single dose) can increase the level of NRF2 protein in C57BL/6 wild-type myocardium[1].
Cell Assay
Western Blot Analysis[1]
Cell Types: U2OS cells
Tested Concentrations: 1, 10, 100 and 1000 nM
Incubation Duration: 24 h
Experimental Results: Reduced N-Cul3 levels at 1 nM and was approximately 1000 times more potent than DI-591.
Western Blot Analysis[1]
Cell Types: U2OS, MDA-MB-231, HCT116 and KYSE70 cells
Tested Concentrations: 0.3, 1, 3, 10, 30, 100, and 1000 nM
Incubation Duration: 24 h
Experimental Results: Significantly reduced the level of N-CUL3 at concentrations as low as 0.3 nM, and achieved profound inhibition of the neddylation of cullin 3 at 1-3 nM. Demonstrate over 300-fold greater potency than DI-591 across various cell lines. Had no obvious effect on the neddylation of other cullin members that were examined, including cullin 1, 2, 4A, 4B, and 5 at concentrations up to 1000 nM. Induced significant accumulation of NRF2 protein at concentrations as low as 0.3-1 nM, and was 100-1000 times more potent than DI-591. Had no obvious effect on protein levels of KEAP1 and p62 in U2OS cells. Had no effect on the levels of p21 and BIM proteins, substrates of CRL1, and CDT1, a substrate of CRL4A, at concentrations up to 1000 nM, consistent with its inability to inhibit neddylation of these cullin members.
Cell Viability Assay[1]
Cell Types: U2OS, MDA-MB-231, HCT116 and KYSE70 cells
Tested Concentrations: 0-1000 nM
Incubation Duration: 72 h
Experimental Results: Showed no cytotoxicity in four cancer cell lines at concentrations up to 1000 nM.
Western Blot Analysis[1]
Cell Types: U2OS cells
Tested Concentrations: 30 nM
Incubation Duration: 5 and 30 min,6, 24, and 48 h
Experimental Results: Inhibited the neddylation of cullin 3 within 5min but had no effect on the neddylation of cullin 1 with treatment time up to 48 h.
Western Blot Analysis[1]
Cell Types: U2OS cells
Tested Concentrations: 0.3, 1, 3, 10, 30, 100, and 1000 nM
Incubation Duration: 1 h
Experimental Results: Enhanced the thermal stability of DCN1 protein in a dose-dependent manner at concentrations as low as 0.3 nM. Exhibited over 1000-fold greater potency than DI-591 in enhancing the thermal stability of cellular DCN1 protein. Showed no discernible effect on the thermal stability of cellular DCN3 protein at concentrations up to 1000 nM.
Animal Protocol
Animal/Disease Models: Male C57BL/6 WT mice (~8 weeks) [1]
Doses: 25 mg/kg
Route of Administration: i.p., once
Experimental Results: Induced robust upregulation of NRF2 protein in the mouse liver. Produced a sustained PD effect in the liver despite being cleared from systemic circulation within 3 hours.
References

[1]. Selective inhibition of cullin 3 neddylation through covalent targeting DCN1 protects mice from acetaminophen-induced liver toxicity. Nat Commun. 2021 May 11;12(1):2621.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C32H47N5O4S
Molecular Weight
597.81
CAS #
2247060-97-3
Appearance
Typically exists as solids at room temperature
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.6728 mL 8.3639 mL 16.7277 mL
5 mM 0.3346 mL 1.6728 mL 3.3455 mL
10 mM 0.1673 mL 0.8364 mL 1.6728 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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