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3'-UMP disodium

Cat No.:V102941 Purity: ≥98%
3'-UMP disodium is a nucleotide, a component of ribonucleic acid (RNA), that is converted to uracil in the rat jejunum.
3'-UMP disodium
3'-UMP disodium Chemical Structure CAS No.: 35170-03-7
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
Official Supplier of:
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Product Description
3'-UMP disodium is a nucleotide, a component of ribonucleic acid (RNA), that can be converted to uracil in rat jejunum.
3'-UMP disodium (Uridine 3'-monophosphate disodium salt) is a nucleotide and a component of ribonucleic acid (RNA). It is a biochemical reagent used in molecular biology and genetic research. This compound can be converted to uracil in the rat jejunum, and it plays a role in various biochemical processes, particularly in the synthesis of ribothymidine-3'-phosphate and the enhancement of RNA synthesis. It is intended for laboratory research use only.
Biological Activity I Assay Protocols (From Reference)
Targets
Human Endogenous Metabolite
Not applicable. As a nucleotide, 3'-UMP disodium is not a drug with a specific pharmacological target. It is an endogenous metabolite used as an RNA component and an analytical standard. It may be involved in the sodium-potassium pump's activity and the de novo pyrimidine synthesis pathway.
ln Vitro
3'-UMP disodium is a nucleotide that serves as a component of ribonucleic acid (RNA). It has been shown to be converted to uracil in the rat jejunum. As a biochemical reagent, its primary activity is in facilitating nucleic acid synthesis and serving as a substrate in metabolic pathways. It is recognized for its ability to enhance RNA synthesis, making it an essential component in molecular biology and genetic research.
ln Vivo
A study in rat jejunum demonstrated that 3'-UMP is transported and metabolized, being converted to uracil. This indicates its bioavailability and metabolic processing in the gastrointestinal tract. However, no specific pharmacological in vivo data for therapeutic applications is available, as it is a biochemical reagent rather than an administered drug.
Enzyme Assay
Not applicable. 3'-UMP disodium is an analytical standard and biochemical reagent, not typically used in non-cellular enzyme activity assays as a test compound. For nucleotide quantification, a standard protocol involves dissolving the compound in water or buffer to prepare calibration standards of known concentrations (e.g., 0.5, 1, 5, 10, 50, 100 uM), which are then analyzed by LC-MS/MS to generate standard curves for bioanalysis.
Cell Assay
Not applicable. 3'-UMP disodium is a nucleotide reagent used for RNA synthesis and biochemical research, not as a modulator in live cell assays. In studies of nucleotide metabolism, the compound can be added to cell culture media (e.g., 50-500 uM) for studying pyrimidine metabolism or as a supplement for nucleotide salvage pathways. RNA synthesis enhancement may be measured by incorporation of radiolabeled precursors.
Animal Protocol
Not applicable. 3'-UMP disodium is not administered to animals as a test drug. In a rat jejunum transport study, 3'-UMP was introduced into an in vitro gut sac preparation to investigate its uptake and metabolism, where it was found to be dephosphorylated and the uridine further metabolized to uracil. This is a study of nucleotide metabolism rather than a therapeutic efficacy study.
ADME/Pharmacokinetics
Not applicable. Pharmacokinetic studies are not performed on 3'-UMP disodium as it is not a drug candidate. As an endogenous nucleotide, if administered exogenously, it would be rapidly dephosphorylated and metabolized, with the resulting uridine and uracil entering the pyrimidine salvage pathways. The compound is an analytical standard, not a drug for systemic administration.
Toxicity/Toxicokinetics
Not applicable. 3'-UMP disodium is an endogenous nucleotide and biochemical reagent. Its sodium salt form is considered safe for laboratory handling under standard practices. Toxicological studies are not required for this research reagent. For research use only, not for human or veterinary consumption.
References

[1]. The transport and metabolism of the uridine mononucleotides by rat jejunum in vitro. J Physiol. 1989 Jan;408:129-35.

Additional Infomation
3'-Ump(2-) is a nucleoside 3'-phosphate(2) obtained by deprotonation of the phosphoryl hydroxyl group of uridine 3'-monophosphate (UMP). It is the predominant form at physiological pH. It is a human metabolite and the conjugate base of 3'-UMP.
3'-UMP disodium (Uridine 3'-monophosphate disodium salt) is supplied as a research-grade nucleotide with molecular formula C9H11N2Na2O9P and molecular weight 368.14. Purity ≥99%. Soluble in water (15 mg/mL) and DMSO. Store at -20degC for long-term stability. It is used in nucleic acid research, RNA synthesis studies, and as a standard for HPLC or LC-MS/MS-based metabolomics analyses.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H11N2NA2O9P
Molecular Weight
368.14
Exact Mass
322.02
CAS #
35170-03-7
PubChem CID
23421206
Appearance
Typically exists as solids at room temperature
Density
1.88 g/cm3
Melting Point
>215°C (dec.)
LogP
0
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
3
Heavy Atom Count
21
Complexity
506
Defined Atom Stereocenter Count
4
SMILES
C1=CN([C@H]2[C@@H]([C@@H]([C@@H](CO)O2)OP(=O)(O)[O-])O)C(=O)N=C1[O-].[Na+].[Na+]
InChi Key
FOGRQMPFHUHIGU-XVFCMESISA-L
InChi Code
InChI=1S/C9H13N2O9P/c12-3-4-7(20-21(16,17)18)6(14)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/p-2/t4-,6-,7-,8-/m1/s1
Chemical Name
[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] phosphate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7164 mL 13.5818 mL 27.1636 mL
5 mM 0.5433 mL 2.7164 mL 5.4327 mL
10 mM 0.2716 mL 1.3582 mL 2.7164 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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