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Phthalazinone pyrazole

Alias: Phthalazinone pyrazole
Cat No.:V4347 Purity: ≥98%
Phthalazinone pyrazole is a potent, selective, orally bioactive Aurora-Kinase inhibitor (antagonist) with IC50 of 0.031 μM.
Phthalazinone pyrazole
Phthalazinone pyrazole Chemical Structure CAS No.: 880487-62-7
Product category: Aurora Kinase
This product is for research use only, not for human use. We do not sell to patients.
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10mg
25mg
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Product Description
Phthalazinone pyrazole is a potent, selective, orally bioactive Aurora-Kinase inhibitor (antagonist) with IC50 of 0.031 μM. Phthalazinone pyrazole blocks mitosis and subsequently inhibits tumor growth through apoptosis of proliferating cells. Phthalazinone pyrazole inhibits epithelial-mesenchymal transition (EMT) during the differentiation of human embryonic stem cells into hepatocyte-like cells (HLC).
Biological Activity I Assay Protocols (From Reference)
Targets
Aurora-A (IC50 = 0.031 μM)
Phthalazinone pyrazole (1 and 10 μM; 30 hours) increases the ability of HLCs to proliferate[2].
Phthalazinone pyrazole (1, 10, and 100 μM; 5 days) increases the morphological changes of the liver in differentiated HLCs without causing cytotoxicity[2].
Phthalazinone pyrazole (1 and 10 μM; 5 and 17 days) inhibits the AKT signaling pathway through an off-target effect and concurrent upregulation of HNF4α, rather than directly inhibiting Aurora-A, which suppresses the EMT and induces maturation of HLCs. Western blot and qPCR are used to confirm the outcome[2].
Phthalazinone pyrazoles are potent and selective inhibitors of Aurora-A kinase. Representative compounds such as 7 (IC₅₀ = 0.031 μM), 8 (0.029 μM), 9 (0.023 μM), 10 (0.024 μM), 11 (0.24 μM), 12 (0.093 μM), 13 (0.037 μM), 16 (0.065 μM), 17 (0.049 μM), 18 (0.025 μM), 19 (0.014 μM), 20 (0.056 μM), 21 (0.032 μM), 22 (0.036 μM), 23 (0.093 μM), 24 (0.27 μM), 25 (0.017 μM), 26 (0.109 μM), 27 (0.067 μM), 28 (0.1 μM), 29 (0.72 μM), 30 (0.071 μM), 31 (0.12 μM), 32 (0.27 μM), 33 (0.035 μM), 34 (0.115 μM), 35 (0.066 μM), and 36 (0.55 μM) showed >1000-fold selectivity over Aurora-B (Aurora-B IC₅₀ typically >100 μM for most compounds). [1]
ln Vitro
Phthalazinone pyrazole (1 and 10 μM; 30 hours) increases the ability of HLCs to proliferate[2].
Phthalazinone pyrazole (1, 10, and 100 μM; 5 days) increases the morphological changes of the liver in differentiated HLCs without causing cytotoxicity[2].
Phthalazinone pyrazole (1 and 10 μM; 5 and 17 days) inhibits the AKT signaling pathway through an off-target effect and concurrent upregulation of HNF4α, rather than directly inhibiting Aurora-A, which suppresses the EMT and induces maturation of HLCs. Western blot and qPCR are used to confirm the outcome[2].

Compounds in this series exhibited antiproliferative activity in multiple cancer cell lines, including HCT116, Colo205, and MCF7. For example, compound 7 showed IC₅₀ values of 7.8 μM in HCT116, 2.9 μM in Colo205, and 1.6 μM in MCF7. Compound 33 showed IC₅₀ values of 0.4 μM in HCT116, 1.7 μM in Colo205, and 1.6 μM in MCF7. Several compounds induced a phenotypic Aurora-A inhibition in MCF7 cells, leading to poorly formed centrosomes and arrest at the G2/M phase. [1]

Compounds in this series exhibited antiproliferative activity in multiple cancer cell lines, including HCT116, Colo205, and MCF7. For example, compound 7 showed IC₅₀ values of 7.8 μM in HCT116, 2.9 μM in Colo205, and 1.6 μM in MCF7. Compound 33 showed IC₅₀ values of 0.4 μM in HCT116, 1.7 μM in Colo205, and 1.6 μM in MCF7. Several compounds induced a phenotypic Aurora-A inhibition in MCF7 cells, leading to poorly formed centrosomes and arrest at the G2/M phase. [1]
ln Vivo
Compounds 16 and 33 showed plasma concentrations above the cellular IC₅₀ after oral administration at 30 mg/kg, with Cmax values of 13 μM and 25 μM, respectively. Their oral bioavailability was substantially improved compared to VX-680. [1]

Compounds 16 and 33 showed plasma concentrations above the cellular IC₅₀ after oral administration at 30 mg/kg, with Cmax values of 13 μM and 25 μM, respectively. Their oral bioavailability was substantially improved compared to VX-680. [1]
Enzyme Assay
Aurora kinase activity was measured using a biochemical kinase assay. Recombinant Aurora-A or Aurora-B kinase was incubated with test compounds and 30 μM ATP in kinase buffer supplemented with blocking agent. The reaction was stopped after 40 minutes by adding EDTA. Phosphorylation of histone H3 (Ser10) was detected using an anti-phospho-histone H3 antibody and a secondary HRP-conjugated antibody, followed by colorimetric development with TMB. Absorbance was read, and IC₅₀ values were calculated using nonlinear curve fitting. All data were averaged from triplicate experiments. [1]

Aurora kinase activity was measured using a biochemical kinase assay. Recombinant Aurora-A or Aurora-B kinase was incubated with test compounds and 30 μM ATP in kinase buffer supplemented with blocking agent. The reaction was stopped after 40 minutes by adding EDTA. Phosphorylation of histone H3 (Ser10) was detected using an anti-phospho-histone H3 antibody and a secondary HRP-conjugated antibody, followed by colorimetric development with TMB. Absorbance was read, and IC₅₀ values were calculated using nonlinear curve fitting. All data were averaged from triplicate experiments. [1]
Cell Assay
Cell viability was assessed using the CellTiter-Glo assay in HCT116 cells. Cells were seeded in 384-well plates at 1000 cells per well and treated with test compounds at concentrations ranging from 30 μM to 0.0015 μM (10-point, 1:3 dilution). After 5 days, CellTiter-Glo reagent was added, and luminescence was measured after cell lysis. Data were averaged from triplicate experiments. [1]

Cell viability was assessed using the CellTiter-Glo assay in HCT116 cells. Cells were seeded in 384-well plates at 1000 cells per well and treated with test compounds at concentrations ranging from 30 μM to 0.0015 μM (10-point, 1:3 dilution). After 5 days, CellTiter-Glo reagent was added, and luminescence was measured after cell lysis. Data were averaged from triplicate experiments. [1]
Animal Protocol
Pharmacokinetic studies were conducted in mice. Compounds were administered orally at 30 mg/kg. Plasma concentrations were measured over time to determine Cmax, half-life (T₁/₂), and oral bioavailability. Specific formulations and vehicle details were not described in the experimental section. [1]

Pharmacokinetic studies were conducted in mice. Compounds were administered orally at 30 mg/kg. Plasma concentrations were measured over time to determine Cmax, half-life (T₁/₂), and oral bioavailability. Specific formulations and vehicle details were not described in the experimental section. [1]
ADME/Pharmacokinetics
Some compounds exhibited moderate to high stability in microsomes and hepatocytes. For example, compound 7 had a hepatic clearance (CLhep) of 2.3 μL/min/10⁶ cells (rat) and a microsomal clearance (CLmic) of 0 μL/min/mg protein (human) and 15.7 μL/min/mg protein (mouse), respectively. Compound 16 had CLmic of 7.4 μL/min/mg protein (human) and 28 μL/min/mg protein (mouse), respectively. Compound 33 had a half-life of 2.4 hours and a Cmax of 25 μM after oral administration of 30 mg/kg. Its oral bioavailability was significantly improved compared to VX-680. [1] For example, compound 7 had a hepatic clearance (CLhep) of 2.3 μL/min/10⁶ cells (rat) and a microsomal clearance (CLmic) of 0 μL/min/mg protein (human) and 15.7 μL/min/mg protein (mouse). Compound 16 had a Cmax of 7.4 μL/min/mg protein (human) and 28 μL/min/mg protein (mouse). Compound 33 had a half-life of 2.4 hours and a Cmax of 25 μM after oral administration of 30 mg/kg. Its oral bioavailability was significantly improved compared to VX-680. [1]
Toxicity/Toxicokinetics
At the tested concentrations (e.g., >50 μM for CYP3A4, 2C9, and 2D6), no significant cytochrome P450 inhibition or hERG channel inhibition was observed in compounds 7, 16, and 33. Compound 7 showed a 20% hERG inhibition rate at 10 μM. [1]
References

[1]. Phthalazinone pyrazoles as potent, selective, and orally bioavailable inhibitors of Aurora-A kinase. J Med Chem. 2011;54(1):312-319.

[2]. Phthalazinone Pyrazole Enhances the Hepatic Functions of Human Embryonic Stem Cell-Derived Hepatocyte-Like Cells via Suppression of the Epithelial-Mesenchymal Transition. Stem Cell Rev Rep. 2018;14(3):438-450.

Additional Infomation
Phthalasinonepyrazole is a novel class of Aurora-A inhibitors with extremely high selectivity (>1000-fold) for Aurora-B. They exhibit good oral bioavailability and plasma exposure, making them suitable for pharmacodynamic studies. The crystal structure of compound 7 bound to Aurora-A reveals a key hydrogen bond with the hinge region, explaining its selectivity for Aurora-B as due to steric hindrance to glutamate residues in Aurora-B. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H15N5O
Molecular Weight
317.344602823257
Exact Mass
317.127
Elemental Analysis
C, 68.13; H, 4.76; N, 22.07; O, 5.04
CAS #
880487-62-7
Related CAS #
880487-62-7;
PubChem CID
11652621
Appearance
Brown to gray solid powder
Density
1.4±0.1 g/cm3
Boiling Point
557.7±52.0 °C at 760 mmHg
Flash Point
291.1±30.7 °C
Vapour Pressure
0.0±1.5 mmHg at 25°C
Index of Refraction
1.716
LogP
3.03
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
3
Heavy Atom Count
24
Complexity
502
Defined Atom Stereocenter Count
0
SMILES
O=C1N(C2C=CC=CC=2)N=C(NC2C=C(C)NN=2)C2C1=CC=CC=2
InChi Key
DSDIWWSXOOXFSI-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H15N5O/c1-12-11-16(21-20-12)19-17-14-9-5-6-10-15(14)18(24)23(22-17)13-7-3-2-4-8-13/h2-11H,1H3,(H2,19,20,21,22)
Chemical Name
4-[(5-methyl-1H-pyrazol-3-yl)amino]-2-phenylphthalazin-1-one
Synonyms
Phthalazinone pyrazole
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 11.11 mg/mL (~35.0 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.1512 mL 15.7560 mL 31.5119 mL
5 mM 0.6302 mL 3.1512 mL 6.3024 mL
10 mM 0.3151 mL 1.5756 mL 3.1512 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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