PF-06273340

Alias: PF-06273340; PF 06273340; PF06273340; PF-6273340; PF 6273340; PF6273340
Cat No.:V2756 Purity: ≥98%
PF-06273340 is a potent, selective, and well-tolerated pan-Trk inhibitor with IC50 of 6, 4, 3 nM for TrkA, TrkB, Trk C respectively.
PF-06273340 Chemical Structure CAS No.: 1402438-74-7
Product category: Trk receptor
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PF-06273340 is a potent, selective, and well-tolerated pan-Trk inhibitor with IC50 of 6, 4, 3 nM for TrkA, TrkB, Trk C respectively. It is tested in several in vitro safety assays and is found to have minimal cytotoxicity in HepG2 or THLE cell lines, with IC50 values of >300 μM and >42 μM, respectively. With the exception of COX-1 (IC50 = 2.7 μM), dopamine transporter assays (Ki = 5.2 μM), and PDEs 4D, 5A, 7B, 8B, and 11 (54−89% inhibition at 10 μM), all IC50/Ki values in a broad panel were >10 μM. The Invitrogen wide kinase panel, which contains 309 kinases, screens for PF-06273340. Of these, all were inhibited by less than 40% at 1 μM, with the exception of MUSK (IC50 53 nM), FLT-3 (IC50 395 nM), IRAK1 (IC50 2.5 μM), MKK (90% at 1 μM), and DDR1 (60% at 1 μM).

Biological Activity I Assay Protocols (From Reference)
Targets
TrkC (IC50 = 3 nM); TrkB (IC50 = 4 nM); TrkA (IC50 = 6 nM)
ln Vitro

PF-06273340 is an exceptionally strong pan-Trk inhibitor that possesses a superior LipE profile. Through a series of in vitro safety assays, PF-06273340 is profiled and found to have little cytotoxicity in either HepG2 or THLE cell lines (IC50 > 300 μM or > 42 μM, respectively). With the exception of COX-1 (IC50 = 2.7 μM), dopamine transporter assays (Ki = 5.2 μM), and PDEs 4D, 5A, 7B, 8B, and 11 (54−89% inhibition at 10 μM), all IC50/Ki values in this broad panel were >10 μM. PF-06273340 is screened against 309 kinases in the Invitrogen wide kinase panel. All of the kinases, with the exception of MUSK (IC50 53 nM), FLT-3 (IC50 395 nM), IRAK1 (IC50 2.5 μM), MKK (90% @ 1 μM), and DDR1 (60% @ 1 μM), were inhibited by less than 40% when tested at 1 μM[1].

ln Vivo
White blood cell counts in rats start to decline at 150 mg/kg/day. Increases in food intake and body weight gain are seen at doses greater than 250 mg/kg; these effects may be explained by central inhibition of TrkB, agonists of which are known to be anorexigenic in rodents. Microscopic observations reveal adaptive alterations in the liver, which are correlated with elevated liver weight (≥250 mg/kg) and elevated cholesterol (1000 mg/kg). PF-06273340 is generally well tolerated up to 1000 mg/kg/day, with an IC50 of roughly 400×TrkA for unbound Cavg plasma exposure[1].
Enzyme Assay
PF-06273340 is a potent well-tolerated pan-Trk inhibitor with IC50 values for TrkA, TrkB, and Trk C of 6, 4, and 3 nM, respectively. TPX-0005 successfully overcomes this primary resistance (IC50 100 nM in the cell proliferation assay) by strongly inhibiting the SRC substrate paxillin (IC50 107 nM) and EML4-ALK (IC50 13 nM) phosphorylation. In a wound healing assay, PX-0005 inhibits H2228 cell migration with activity comparable to that of saracatinib. The Invitrogen wide kinase panel, which contains 309 kinases, screens for PF-06273340. Of these, all were inhibited by less than 40% at 1 μM, with the exception of MUSK (IC50 53 nM), FLT-3 (IC50 395 nM), IRAK1 (IC50 2.5 μM), MKK (90% at 1 μM), and DDR1 (60% at 1 μM).
Cell Assay
PF-06273340 is examined in a number of in vitro safety tests, demonstrating minimal cytotoxicity in HepG2 or THLE cell lines (IC50 > 300 μM and > 42 μM, respectively). Every IC50/Ki value in a wide panel was greater than 10 μM, with the exception of COX-1 (IC50 = 2.7 μM), dopamine transporter tests (Ki = 5.2 μM), and PDEs 4D, 5A, 7B, 8B, and 11 (54−89% inhibition at 10 μM).
Animal Protocol
Male SD rats
0.25, 2.5 and 25 mg/kg
oral administration
References

[1]. J Med Chem . 2016 Nov 23;59(22):10084-10099.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H22CLN7O3
Molecular Weight
479.92
Exact Mass
479.15
Elemental Analysis
C, 57.56; H, 4.62; Cl, 7.39; N, 20.43; O, 10.00
CAS #
1402438-74-7
Related CAS #
1402438-74-7
Appearance
Off-white to yellow to brown
SMILES
CC(C)(CO)N1C=C(C2=CN=C(N=C21)N)C(=O)C3=CC(=CN=C3)NC(=O)CC4=NC=C(C=C4)Cl
InChi Key
BPIWZDNVMQQBQX-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H22ClN7O3/c1-23(2,12-32)31-11-18(17-10-28-22(25)30-21(17)31)20(34)13-5-16(9-26-7-13)29-19(33)6-15-4-3-14(24)8-27-15/h3-5,7-11,32H,6,12H2,1-2H3,(H,29,33)(H2,25,28,30)
Chemical Name
N-[5-[2-amino-7-(1-hydroxy-2-methylpropan-2-yl)pyrrolo[2,3-d]pyrimidine-5-carbonyl]pyridin-3-yl]-2-(5-chloropyridin-2-yl)acetamide
Synonyms
PF-06273340; PF 06273340; PF06273340; PF-6273340; PF 6273340; PF6273340
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~95 mg/mL (~197.9 mM)
Water:<1 mg/mL
Ethanol:1 mg/mL (2.08 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0837 mL 10.4184 mL 20.8368 mL
5 mM 0.4167 mL 2.0837 mL 4.1674 mL
10 mM 0.2084 mL 1.0418 mL 2.0837 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT01601834 Completed Drug: PF-06273340 or Placebo PAIN Pfizer May 2012 Phase 1
NCT01706796 Completed Drug: PF-06273340 Healthy Pfizer November 2012 Phase 1
NCT02260947 Completed Drug: PF-06273340 Healthy Pfizer October 2014 Phase 1
NCT01934738 Completed Drug: PF-06273340
Drug: Placebo
Healthy Pfizer October 2013 Phase 1
Biological Data
  • PF-06273340
    Hydrogen bond interactions of 2-aminopyrrolopyrimidine group with the TrkA hinge binding region (blue)2016 Nov 23;59(22):10084-10099

  • PF-06273340
    Schematic illustration of orally administered drug absorption across the intestinal epithelium and distribution across the brain vascular endothelium2016 Nov 23;59(22):10084-10099

  • PF-06273340
    Neurotrophins NGF, BDNF, NT-3, NT-4/5, and their receptors TrkA, TrkB, and TrkC.2016 Nov 23;59(22):10084-10099
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