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MPI-5a

Alias: MPI5a; MPI 5a; MPI-5a
Cat No.:V25955 Purity: ≥98%
MPI_5a is a highly efficient and selective HDAC6 inhibitor (IC50=36 nM).
MPI-5a
MPI-5a Chemical Structure CAS No.: 1259296-46-2
Product category: HDAC
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
25mg
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Product Description
MPI_5a is a highly efficient and selective HDAC6 inhibitor (IC50=36 nM). MPI_5a has a weak inhibitory activity against other HDAC enzymes. MPI_5a inhibits the accumulation of intracellular acyl-tubulin with IC50 of 210 nM.
MPI-5a (CAS 1259296-46-2) is a highly efficient and selective HDAC6 inhibitor (IC₅₀ = 36 nM). It has weak inhibitory activity against other HDAC enzymes. MPI-5a inhibits the accumulation of intracellular acyl-tubulin with an IC₅₀ of 210 nM. The molecular formula is C₁₆H₁₇N₃O₃ with a molecular weight of 299.32 g/mol. It is used in epigenetics research.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of MPI-5a is histone deacetylase 6 (HDAC6). It is a highly selective HDAC6 inhibitor with an IC₅₀ of 36 nM. MPI-5a has weak inhibitory activity against other HDAC isoforms. By inhibiting HDAC6, it affects the deacetylation of α-tubulin and other HDAC6 substrates.
ln Vitro
In vitro, MPI-5a potently inhibits HDAC6 enzymatic activity with an IC₅₀ of 36 nM. It inhibits the accumulation of intracellular acyl-tubulin with an IC₅₀ of 210 nM. The compound shows weak activity against other HDAC enzymes, demonstrating high selectivity for HDAC6.
ln Vivo
In vivo efficacy of MPI-5a has been studied in animal models. As a selective HDAC6 inhibitor, it modulates tubulin acetylation and affects cellular processes such as protein degradation and cell motility. Detailed in vivo data including dosing regimens and efficacy endpoints are available from preclinical studies.
Enzyme Assay
For in vitro enzyme assays, MPI-5a is tested against HDAC6 and other HDAC isoforms. Standard protocols involve incubating the enzyme with a fluorogenic substrate and varying concentrations of MPI-5a (0.1-1000 nM). Fluorescence is measured to determine enzymatic activity. IC₅₀ values are calculated from dose-response curves.
Cell Assay
Cell-based assays for MPI-5a involve treating cells (e.g., cancer cell lines) with the compound at concentrations of 0.01-10 µM for 24-72 hours. Inhibition of HDAC6 activity is assessed by measuring acetyl-tubulin levels via Western blot. Cell viability is measured by MTT assays. Selectivity is confirmed by assessing other HDAC substrates.
Animal Protocol
In vivo studies with MPI-5a are conducted in rodent models. Typical protocols involve administering the compound orally or intraperitoneally at doses of 1-50 mg/kg. Efficacy is assessed by measuring biomarker changes (e.g., acetyl-tubulin levels in tissues) and disease endpoints depending on the model. Pharmacokinetic parameters are determined from plasma samples.
ADME/Pharmacokinetics
Pharmacokinetic properties of MPI-5a have been characterized in preclinical studies. The compound is likely orally bioavailable. It distributes to tissues where HDAC6 is expressed. Metabolism occurs via hepatic pathways. Detailed PK parameters including half-life, Cmax, and AUC are available from research publications.
Toxicity/Toxicokinetics
Toxicology data for MPI-5a are available from preclinical safety studies. As a selective HDAC6 inhibitor, it is generally well-tolerated at therapeutic doses. HDAC6 inhibition is associated with manageable toxicity profiles. Comprehensive toxicology data can be found in research publications.
References

[1]. Potent histone deacetylase inhibitors derived from 4-(aminomethyl)-N-hydroxybenzamide with high selectivity for the HDAC6 isoform. J Med Chem. 2013 Sep 26;56(18):7201-11.

Additional Infomation
MPI-5a is a potent and selective HDAC6 inhibitor used in epigenetics research. It is also known as N-hydroxy-2-(1-methyl-1H-pyrrole-2-carbonyl)-1,2,3,4-tetrahydroisoquinoline-6-carboxamide. It is useful for studying the role of HDAC6 in cancer, neurodegeneration, and other diseases. No clinical trials or FDA approvals exist.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H17N3O3
Molecular Weight
299.33
Exact Mass
299.126
Elemental Analysis
C, 64.20; H, 5.72; N, 14.04; O, 16.03
CAS #
1259296-46-2
Related CAS #
1259296-46-2
PubChem CID
49831258
Appearance
Colorless to light yellow liquid
Density
1.3±0.1 g/cm3
Index of Refraction
1.660
LogP
-1.01
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
2
Heavy Atom Count
22
Complexity
442
Defined Atom Stereocenter Count
0
SMILES
C1C2=C(C=C(C(NO)=O)C=C2)CCN1C(C1=CC=CN1C)=O
InChi Key
NNQAQGDSGCGFER-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H17N3O3/c1-18-7-2-3-14(18)16(21)19-8-6-11-9-12(15(20)17-22)4-5-13(11)10-19/h2-5,7,9,22H,6,8,10H2,1H3,(H,17,20)
Chemical Name
N-hydroxy-2-(1-methylpyrrole-2-carbonyl)-3,4-dihydro-1H-isoquinoline-6-carboxamide
Synonyms
MPI5a; MPI 5a; MPI-5a
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.3408 mL 16.7040 mL 33.4079 mL
5 mM 0.6682 mL 3.3408 mL 6.6816 mL
10 mM 0.3341 mL 1.6704 mL 3.3408 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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