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Enocitabine

Alias: Sunrabin; BH-AC; BHAC; BH AC;Enocitabine; Arabinoside; NSC-239336; NSC239336; NSC 239336
Cat No.:V20572 Purity: ≥98%
Enocitabine (NSC-239336; BHAC; Sunrabin; Arabinoside) is a cytarabine analogue, cytosine analogue and DNA chain terminator approved as an anticancer drug for the treatment of acute myeloid leukemia.
Enocitabine
Enocitabine Chemical Structure CAS No.: 55726-47-1
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
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25mg
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
Enocitabine (NSC-239336; BHAC; Sunrabin; Arabinoside) is a cytarabine analogue, cytosine analogue and DNA chain terminator approved as an anticancer drug for the treatment of acute myeloid leukemia. It also functions as a DNA replication inhibitor, which prevents the cytomegalovirus from proliferating and replicating.
Enocitabine is a lipophilic prodrug of the nucleoside analog cytarabine (Ara-C), designed to improve oral bioavailability and resistance to deamination. It is a DNA chain terminator that, once metabolized, converts to cytarabine and incorporates into DNA, halting cell division. Enocitabine exhibits antileukemic and antiviral activities, particularly against human cytomegalovirus (CMV). It is approved as an anticancer drug for the treatment of acute myeloid leukemia (AML) and is marketed under the brand name Sunrabin.
Biological Activity I Assay Protocols (From Reference)
Targets
CMV; DNA replication
Enocitabine targets viral DNA polymerase and cellular DNA replication machinery. As a nucleoside analog, it inhibits DNA synthesis by incorporating into the DNA chain and acting as a chain terminator. The compound also inhibits the replication of human cytomegalovirus (CMV). Its primary mechanism involves disruption of DNA polymerase function and other enzymes involved in DNA replication.
ln Vitro
Enocitabine is resistant to deamination due to the presence of a highly lipophilic group in enocitabine at the cytosine moiety of cytarabine's 4-amino position[1].
Enocitabine and pirarubicin work together to increase the cytotoxic activities of HeLa S3 human uterine cervix carcinoma and K562 human myelocytic leukemia cells. When it comes to HeLa S3 and K562 cells, etoposide and enocitabine work in concert[2].
Enocitabine significantly suppresses the synthesis of HCMV DNA and causes the human cytomegalovirus (HCMV)-infected cells to produce triphosphate forms of the nucleoside analogs[3].
In vitro, Enocitabine acts as a potent DNA replication inhibitor and DNA chain terminator. It inhibits the replication of human cytomegalovirus (CMV) in cultured Vero cells with an EC90 of 0.5 µg/ml. The compound demonstrates antileukemic activity against various leukemia cell lines. Enocitabine is resistant to deamination due to the lipophilic group at the 4-amino position of the cytosine moiety, which enhances its stability compared to cytarabine.
ln Vivo
In vivo, Enocitabine is used clinically as an anticancer agent for the treatment of acute myeloid leukemia (AML). It has been shown to reduce virus yield in CMV-infected models. As a lipophilic prodrug of cytarabine, Enocitabine provides improved oral bioavailability and prolonged systemic exposure compared to the parent drug, making it effective in hematological malignancies.
Enzyme Assay
The in vitro enzyme activity assay for Enocitabine typically involves measuring its inhibitory effect on viral DNA polymerase. Recombinant or purified DNA polymerase is incubated with varying concentrations of Enocitabine (or its active metabolite cytarabine triphosphate) and a DNA template with radiolabeled nucleotides. The extent of DNA synthesis inhibition is measured by scintillation counting or gel electrophoresis. The compound acts as a DNA chain terminator, and IC50 values are determined from dose-response curves.
Cell Assay
In vitro cellular assays for Enocitabine involve treating cultured leukemia cell lines or CMV-infected Vero cells with varying concentrations of the compound. Cell viability and proliferation are assessed using MTT or trypan blue exclusion assays. Antiviral activity is measured by quantifying viral DNA replication via qPCR or plaque reduction assays. The EC90 for CMV inhibition (0.5 µg/ml) and IC50 for antiproliferative activity are determined from dose-response curves.
Animal Protocol
In vivo animal experiments for Enocitabine typically use mouse xenograft models of acute myeloid leukemia or models of CMV infection. Tumor-bearing or virus-infected mice are administered Enocitabine via oral or intravenous routes at various doses. Tumor volume or viral load is measured at regular intervals. Survival rates and hematological parameters are monitored to assess efficacy and toxicity. The compound's antileukemic and antiviral activities are evaluated by comparing treatment groups to vehicle controls.
ADME/Pharmacokinetics
Enocitabine is a lipophilic prodrug of cytarabine designed for oral administration. It is metabolized to cytarabine, which is then converted to its active triphosphate form. The compound has a molecular weight of 335.31 (C13H17N3O5S). As a lipophilic analog, Enocitabine exhibits improved oral bioavailability and resistance to deamination compared to cytarabine. Specific PK parameters including half-life and Cmax are available from clinical pharmacology studies.
Toxicity/Toxicokinetics
Enocitabine is an approved anticancer drug for acute myeloid leukemia, and its safety profile has been established through clinical use. As a nucleoside analog, common adverse effects may include myelosuppression, gastrointestinal disturbances, and hepatotoxicity. The compound is contraindicated in patients with severe hepatic or renal impairment. Regular monitoring of blood counts and liver function is required during treatment. Complete toxicology data are available from the drug's clinical development program.
References

[1]. Clinical pharmacokinetics of cytarabine formulations.Clin Pharmacokinet. 2002;41(10):705-18.

[2]. In vitro combined effects of pirarubicin (THP) and various antitumor drugs on human tumor cell lines. Gan To Kagaku Ryoho. 1990 Apr;17(4 Pt 1):633-8.

[3]. Antiviral effect of antileukemic drugs N4-behenoyl-1-beta-D-arabinofuranosylcytosine (BH-AC) and 2,2'-anhydro-1-beta-D-arabinofuranosylcytosine (cyclo-C) against human cytomegalovirus. J Med Virol. 1990 Jun;31(2):141-7.

Additional Infomation
Enocitabine is an organic molecular entity. It is a pyrimidine antimetabolite that is converted into cytarabine in the body. (NCI)
Enocitabine (CAS#: 55726-47-1) is a lipophilic prodrug of cytarabine (Ara-C) approved for the treatment of acute myeloid leukemia (AML). It is also known as NSC-239336, BHAC, and Sunrabin. The compound exhibits both antileukemic and antiviral activities, inhibiting DNA replication and human CMV replication. Enocitabine is resistant to deamination due to its lipophilic modification at the 4-amino position. It remains a clinically used agent in certain regions for hematological malignancies.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C31H55N3O6
Molecular Weight
565.7849
Exact Mass
565.409
Elemental Analysis
C, 65.81; H, 9.80; N, 7.43; O, 16.97
CAS #
55726-47-1
Related CAS #
55726-47-1
PubChem CID
71734
Appearance
White to off-white solid powder
Density
1.2±0.1 g/cm3
Melting Point
141-142ºC
Index of Refraction
1.554
LogP
9
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
23
Heavy Atom Count
40
Complexity
774
Defined Atom Stereocenter Count
4
SMILES
CCCCCCCCCCCCCCCCCCCCCC(N=C1C=CN(C(N1)=O)C2C(O)C(O)C(O2)CO)=O
InChi Key
SAMRUMKYXPVKPA-VFKOLLTISA-N
InChi Code
InChI=1S/C31H55N3O6/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27(36)32-26-22-23-34(31(39)33-26)30-29(38)28(37)25(24-35)40-30/h22-23,25,28-30,35,37-38H,2-21,24H2,1H3,(H,32,33,36,39)/t25-,28-,29+,30-/m1/s1
Chemical Name
N-[1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]docosanamide
Synonyms
Sunrabin; BH-AC; BHAC; BH AC;Enocitabine; Arabinoside; NSC-239336; NSC239336; NSC 239336
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~2 mg/mL (~3.5 mM)
H2O : < 0.1 mg/mL
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7675 mL 8.8374 mL 17.6747 mL
5 mM 0.3535 mL 1.7675 mL 3.5349 mL
10 mM 0.1767 mL 0.8837 mL 1.7675 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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