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Elenbecestat (E2609)

Alias: E-2609; E2609; E 2609.
Cat No.:V5256 Purity: ≥98%
Elenbecestat (E-2609; E2609) is a novel, potent orally bioactive and BBB-penetrantBACE1 inhibitor which can reduce the plasma beta-amyloid levels after single dosing and has the potential for the treatment of Alzheimers disease (AD).
Elenbecestat (E2609)
Elenbecestat (E2609) Chemical Structure CAS No.: 1388149-39-0
Product category: New6
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
Elenbecestat (E-2609; E2609) is a novel, potent orally bioactive and BBB-penetrant BACE1 inhibitor which can reduce the plasma beta-amyloid levels after single dosing and has the potential for the treatment of Alzheimer's disease (AD). By inhibiting BACE, a key enzyme in the production of Aβ peptides, E2609 decreases the formation of these peptides which can aggregate into toxic oligomers and protofibrils and eventually form amyloid plaques in the brain.

Introduction: Elenbecestat (also known as E2609) is a novel, potent, orally bioactive, and BBB-penetrant BACE1 (beta-site APP cleaving enzyme 1) inhibitor. It reduces plasma beta-amyloid levels after single dosing and has the potential for the treatment of Alzheimer's disease (AD). By inhibiting BACE1, a key enzyme in the production of Aβ peptides, E2609 decreases the formation of these peptides which can aggregate into toxic oligomers and protofibrils and eventually form amyloid plaques in the brain.
Biological Activity I Assay Protocols (From Reference)
Targets
Target: Elenbecestat targets BACE1 (beta-site APP cleaving enzyme 1), a key enzyme in the production of amyloid-β (Aβ) peptides. BACE1 cleaves amyloid precursor protein (APP) at the β-secretase site, initiating the production of Aβ peptides. By inhibiting BACE1 activity, Elenbecestat reduces cleavage of APP and subsequent production of Aβ40 and Aβ42 peptides. This prevents aggregation of Aβ into toxic oligomers and protofibrils that form amyloid plaques in the brain.
ln Vitro
In Vitro Activity: Elenbecestat demonstrates potent BACE1 inhibitory activity in biochemical assays. It reduces Aβ production in cell-based models. Detailed IC50 values and specific in vitro activity data are available from the primary literature. The compound shows high potency against BACE1 with favorable selectivity over other aspartyl proteases. It effectively lowers Aβ40 and Aβ42 levels in cell culture supernatants in a concentration-dependent manner.
ln Vivo
In Vivo Activity: Elenbecestat reduces plasma beta-amyloid levels after single dosing in preclinical models. It demonstrates brain penetration and central Aβ reduction. The compound has been evaluated in animal models of Alzheimer's disease. In clinical trials, Elenbecestat was investigated for the treatment of Alzheimer's disease. However, development was discontinued due to potential liver enzyme elevations and risk-benefit considerations.
Enzyme Assay
In Vitro Enzyme/Receptor Binding Protocol: BACE1 enzymatic activity assays typically use recombinant BACE1 enzyme and a fluorogenic or luminescent peptide substrate based on the APP β-secretase cleavage site. Inhibition is measured by decreased substrate cleavage in the presence of varying concentrations of Elenbecestat. IC50 values are determined from dose-response curves. Selectivity assays against related aspartyl proteases such as BACE2, cathepsin D, and renin are performed to assess specificity.
Cell Assay
In Vitro Cell-Based Assay Protocol: Cell-based assays using neuronal cell lines or primary neurons expressing APP are used to measure Aβ production. Cells are treated with Elenbecestat at various concentrations, and secreted Aβ40 and Aβ42 levels in conditioned media are measured by ELISA or immunoassay. Compound effect on cell viability is also assessed using standard cytotoxicity assays such as MTT or LDH release. Blood-brain barrier penetration can be assessed using in vitro BBB models.
Animal Protocol
In Vivo Animal Assay Protocol: Transgenic mouse models of Alzheimer's disease (such as APP/PS1 or Tg2576 mice) are used for in vivo efficacy studies. Elenbecestat is administered orally, and plasma and brain Aβ levels are measured at various time points. Chronic dosing studies assess amyloid plaque burden and cognitive function using behavioral tests such as Morris water maze. Pharmacodynamic markers including Aβ levels in cerebrospinal fluid are measured.
ADME/Pharmacokinetics
Pharmacokinetics: Elenbecestat is orally bioavailable and penetrates the blood-brain barrier. After oral administration, it reduces plasma Aβ levels. Detailed PK parameters including half-life, Cmax, and brain penetration have been characterized in preclinical and clinical studies. The compound's ability to cross the blood-brain barrier is essential for its central nervous system target engagement. Elimination pathways and metabolite profiles have been studied in the context of clinical development.
Toxicity/Toxicokinetics
Toxicity: Elenbecestat was evaluated in clinical trials for Alzheimer's disease. However, elevated liver enzymes were observed in 2 patients, leading to the discontinuation of the trial in May 2018. The primary reason for discontinuation was the potential risk of liver toxicity. No other significant toxicity concerns were reported at therapeutic doses. Comprehensive toxicity data are available from clinical studies. The compound is for research use only and is not clinically approved.
References
Eur J Med Chem. 2018 Mar 25;148:436-4
Additional Infomation
Additional Information: Elenbecestat has CAS number 1388149-39-0, molecular formula C19H15F6N5O2S, and molecular weight 491.41. It is also known as E-2609, E2609, and E 2609. The compound is a BACE1 inhibitor with potential for Alzheimer's disease treatment. By inhibiting BACE, a key enzyme in Aβ peptide production, E2609 decreases formation of toxic oligomers and protofibrils that form amyloid plaques. Clinical development was discontinued due to liver enzyme elevation risk. For research use only, not for human therapy.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Weight
491.410123109818
Exact Mass
491.085
CAS #
1388149-39-0
Related CAS #
1388149-39-0;Elenbecestat HCl;
PubChem CID
57524928
Appearance
Light yellow to yellow solid powder
LogP
2.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
12
Rotatable Bond Count
4
Heavy Atom Count
33
Complexity
773
Defined Atom Stereocenter Count
3
SMILES
S1C(N)=N[C@@]2(C3C(=CC=C(C=3)NC(C3C=NC(C(F)F)=CN=3)=O)F)CO[C@H](C(F)(F)F)[C@H]2C1
InChi Key
ZKKFSFUYHYWFFE-FWVNDXEPSA-N
InChi Code
InChI=1S/C19H15F6N5O2S/c20-11-2-1-8(29-16(31)13-5-27-12(4-28-13)15(21)22)3-9(11)18-7-32-14(19(23,24)25)10(18)6-33-17(26)30-18/h1-5,10,14-15H,6-7H2,(H2,26,30)(H,29,31)/t10-,14+,18-/m1/s1
Chemical Name
N-(3-((4aS,5S,7aS)-2-amino-5-(trifluoromethyl)-4a,5-dihydro-4H-furo[3,4-d][1,3]thiazin-7a(7H)-yl)-4-fluorophenyl)-5-(difluoromethyl)pyrazine-2-carboxamide
Synonyms
E-2609; E2609; E 2609.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0350 mL 10.1748 mL 20.3496 mL
5 mM 0.4070 mL 2.0350 mL 4.0699 mL
10 mM 0.2035 mL 1.0175 mL 2.0350 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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