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E3 ligase Ligand 17 hydrochloride

Cat No.:V31357 Purity: ≥98%
E3 ligase Ligand 17 hydrochloride is a ligand for E3 ubiquitin ligase.
E3 ligase Ligand 17 hydrochloride
E3 ligase Ligand 17 hydrochloride Chemical Structure CAS No.: 2305369-00-8
Product category: E3 Ligase Ligand-Linker Conjugates
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
250mg
Other Sizes
Official Supplier of:
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Product Description
E3 ligase Ligand 17 hydrochloride is a ligand for E3 ubiquitin ligase. E3 ligase Ligand 17 hydrochloride can be connected to the ligand for protein by a linker to form PROTACs. PROTACs are inducers of ubiquitination-mediated degradation of cancer-promoting proteins.


E3 ligase Ligand 17 hydrochloride (CAS 2305369-00-8), also known as Pomalidomide-C2-NH2 hydrochloride, is a ligand for E3 ubiquitin ligase. It incorporates a Pomalidomide-based cereblon ligand and can be connected to a target protein ligand by a linker to form PROTACs.
Biological Activity I Assay Protocols (From Reference)
Targets
E3 ubiquitin ligase (cereblon/CRBN). E3 ligase Ligand 17 hydrochloride is a ligand for E3 ubiquitin ligase that incorporates a Pomalidomide-based cereblon ligand. It can be connected to the ligand for a target protein by a linker to form PROTACs, which induce ubiquitination and degradation of oncogenic proteins.
ln Vitro
E3 ligase Ligand 17 hydrochloride serves as a building block for PROTAC synthesis. The Pomalidomide-based cereblon ligand enables recruitment of the E3 ubiquitin ligase complex. When conjugated to a target protein ligand via a linker, the resulting PROTAC induces ubiquitination and degradation of the target protein.
ln Vivo
In vivo, E3 ligase Ligand 17 hydrochloride is not active as a standalone compound; its activity is realized only when incorporated into a complete PROTAC molecule. The resulting PROTAC would be expected to demonstrate target protein degradation and efficacy in animal models of disease.
Enzyme Assay
E3 ligase Ligand 17 hydrochloride is characterized by its chemical structure and purity rather than enzymatic activity. The cereblon binding affinity of the Pomalidomide-based ligand can be measured using surface plasmon resonance (SPR) or isothermal titration calorimetry (ITC) with recombinant cereblon protein. Binding affinity (Kd) is calculated from binding isotherms.
Cell Assay
Cells are treated with a complete PROTAC molecule synthesized using E3 ligase Ligand 17 hydrochloride. Target protein degradation is assessed by Western blotting. Ubiquitination is evaluated by immunoprecipitation followed by ubiquitin blotting. Functional assays (cell viability, proliferation, apoptosis) are performed to assess the biological effects of target degradation.
Animal Protocol
Animal studies are conducted with complete PROTAC molecules incorporating E3 ligase Ligand 17 hydrochloride. Mice bearing tumor xenografts or other disease models are administered the PROTAC via appropriate routes. Target protein degradation in tissues is assessed by Western blotting or immunohistochemistry. Efficacy is determined by disease outcome measures.
ADME/Pharmacokinetics
E3 ligase Ligand 17 hydrochloride has a molecular weight of 352.77 g/mol and formula C1₅H1₇ClN4O4. As a linker-ligand conjugate, its PK properties are determined by the complete PROTAC molecule rather than the building block alone. The compound is a light yellow to yellow solid powder and handled as a research chemical.
Toxicity/Toxicokinetics
Toxicology data for E3 ligase Ligand 17 hydrochloride are not publicly available. As a building block for PROTACs, toxicity would be assessed for the final PROTAC molecule. Standard preclinical safety assessment would include cytotoxicity screening, hERG testing, and repeat-dose toxicology studies in rodents.
References

[1]. Development of Protein Degradation Inducers of Androgen Receptor by Conjugation of Androgen Receptor Ligands and Inhibitor of Apoptosis Protein Ligands. J Med Chem. 2018 Jan 25;61(2):543-575.

Additional Infomation
E3 ligase Ligand 17 hydrochloride is a research reagent for PROTAC development. It is not clinically approved. The compound incorporates a Pomalidomide-based cereblon ligand and serves as a crucial building block for designing targeted protein degraders using PROTAC technology.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H17CLN4O4
Molecular Weight
352.7729
Exact Mass
352.093
CAS #
2305369-00-8
PubChem CID
139035073
Appearance
Light yellow to yellow solid powder
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
4
Heavy Atom Count
24
Complexity
550
Defined Atom Stereocenter Count
0
SMILES
Cl[H].O=C1C2C(=C([H])C([H])=C([H])C=2C(N1C1([H])C(N([H])C(C([H])([H])C1([H])[H])=O)=O)=O)N([H])C([H])([H])C([H])([H])N([H])[H]
InChi Key
DSJCOXQYDMWPEY-UHFFFAOYSA-N
InChi Code
InChI=1S/C15H16N4O4.ClH/c16-6-7-17-9-3-1-2-8-12(9)15(23)19(14(8)22)10-4-5-11(20)18-13(10)21;/h1-3,10,17H,4-7,16H2,(H,18,20,21);1H
Chemical Name
4-(2-aminoethylamino)-2-(2,6-dioxopiperidin-3-yl)isoindole-1,3-dione;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~354.34 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8347 mL 14.1735 mL 28.3471 mL
5 mM 0.5669 mL 2.8347 mL 5.6694 mL
10 mM 0.2835 mL 1.4174 mL 2.8347 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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