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CP-10

Alias: CP-10; CP 10; CP10
Cat No.:V5273 Purity: ≥98%
CP-10 (CP10; CP 10), designed from a focused PROTAC library hijacking cancer therapeutic target CDK6, is a novel and potent PROTAC-based protein degrader targeting CDK6 with high selectivity, specificity, and remarkable CDK6 degradation efficiency (DC50=2.1 nM).
CP-10
CP-10 Chemical Structure CAS No.: 2366268-80-4
Product category: New6
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
CP-10 (CP10; CP 10), designed from a focused PROTAC library hijacking cancer therapeutic target CDK6, is a novel and potent PROTAC-based protein degrader targeting CDK6 with high selectivity, specificity, and remarkable CDK6 degradation efficiency (DC50=2.1 nM). It inhibits proliferation of several haematopoietic cancer cells with impressive potency including multiple myeloma, and can still degrades mutated and overexpressed CDK6. A design principle as 'match/mismatch' was proposed for understanding the degradation profile differences in these PROTACs. Notably, potent PROTACs with specific and remarkable CDK6 degradation potential were generated by linking CDK6 inhibitor palbociclib and E3 ligase CRBN recruiter pomalidomide. The PROTAC strongly inhibited proliferation of hematopoietic cancer cells including multiple myeloma and robustly degraded copy-amplified/mutated forms of CDK6, indicating future potential clinical applications.


CP-10 is a PROTAC (proteolysis targeting chimera) molecule designed to degrade CDK6. It consists of the CDK4/6 inhibitor palbociclib linked to the CRBN E3 ligase recruiter pomalidomide via a linker. CP-10 potently and preferentially degrades CDK6 over CDK4, with DC50 values of 2.1 nM for CDK6 and 150-180 nM for CDK4. It selectively inhibits proliferation of hematopoietic cancer cells such as multiple myeloma and mantle cell lymphoma, and degrades overexpressed or mutated (D163G, S178P) forms of CDK6, showing potential to overcome CDK4/6 inhibitor resistance [1].
Biological Activity I Assay Protocols (From Reference)
Targets
CP-10 targets CDK6 (cyclin-dependent kinase 6) for degradation via the ubiquitin-proteasome system. For CDK6 degradation: DC50 ≈ 2.1 nM. For CDK4 degradation: DC50 ≈ 150-180 nM (50-80 fold higher). In vitro kinase inhibition activity for CDK4 or CDK6 is 10-25 fold weaker than palbociclib [1].
ln Vitro
CP-10 caused approximately 72% degradation of CDK6 at 10 nM and 89% degradation at 100 nM in human astroblastoma U251 cells. Compared to CDK6 (DC50), CDK4 is substantially less susceptible to CP-10's degradation. In both mantle cell thoracic cells (in Mino, IC50≈8 nM) and multiple myeloma cells MM.1S (IC50≈10 nM), CP-10 decreases cell viability [1]: 50–80 times][1].
CP-10 (10-100 nM) induces degradation of CDK6 in U251 cells: ~72% degradation at 10 nM, 89% at 100 nM. Time-lapse shows degradation begins at ~2 h, complete by 6 h. It is highly selective for CDK6 with minimal off-target effects (quantitative proteomics shows CDK6 as the most downregulated protein after 4 h treatment). CP-10 induces degradation of overexpressed CDK6 (in A-673 cells) and mutant forms D163G and S178P as efficiently as wild-type (though D163G slightly compromised). In palbociclib-resistant breast cancer cells (MCF-7 CDK6-amplified and FAT1 loss), CP-10 degrades CDK6 and CDK4 and inhibits proliferation. Control experiments: palbociclib, pomalidomide, or non-degrading controls CP-9 and CP-23 do not induce CDK6 degradation. Proteasome inhibitor carfilzomib and neddylation inhibitor MLN-4924 block CP-10-induced degradation. In vitro kinase assay shows CP-10 has weaker kinase inhibitory activity than palbociclib (10-25 fold) [1].
Enzyme Assay
In vitro kinase assay was performed to measure the kinase inhibitory activity of CP-10 against CDK4 and CDK6. The results showed that CP-10 had 10-25 fold weaker inhibitory activity compared to palbociclib. No detailed protocol for the kinase assay is provided in the paper [1].
Cell Assay
CP-10 was tested in multiple cancer cell lines. Cells were treated with increasing concentrations of CP-10, and cell proliferation was measured by CCK-8 assay after 84 h. In MM.1S multiple myeloma cells, IC50 ≈ 10 nM (vs palbociclib IC50 ≈ 200 nM). In Mino mantle cell lymphoma cells, IC50 ≈ 8 nM (vs palbociclib IC50 ≈ 45 nM). In THP-1 and HL-60 leukemia cells, activities were comparable or weaker. In RPMI8226 multiple myeloma cells, CP-10 was far weaker than palbociclib. Non-degrading controls CP-9 and CP-23 barely inhibited proliferation. Immunoblots were performed to detect CDK4, CDK6, and phospho-Rb (S780) levels. For degradation assays, U251 cells were treated with CP-10 at indicated concentrations for 24 h, then lysates were immunoblotted with anti-CDK6, anti-CDK4, and anti-β-tubulin antibodies. DC50 values were calculated from densitometry. For time-lapse, cells were treated with 100 nM CP-10 and harvested at 0, 2, 4, 6, 12, 24 h. For selectivity, U251 cells were treated with 500 nM CP-10 or DMSO for 4 h, then quantitative proteomic analysis was performed. For mutant degradation, MCF-7 cells stably expressing FLAG-tagged CDK6 WT, D163G, or S178P were treated with 50 nM or 200 nM CP-10 for 24 h, then immunoblotted with anti-FLAG. For overexpression model, A-673 cells (low endogenous CDK6) were transduced with CDK6 via lentivirus, then treated with DMSO or 200 nM CP-10 for 24 h. For resistant cell lines, MCF-7 CDK6-amplified and MCF-7 FAT1 CRISPR cells were treated with 200 nM CP-10 for 24 h [1].
References

[1]. Potent and Preferential Degradation of CDK6 via Proteolysis Targeting Chimera Degraders. J Med Chem. 2019 Aug 2.

Additional Infomation
CP-10 is a PROTAC degrader targeting CDK6, derived from palbociclib and pomalidomide. It preferentially degrades CDK6 over CDK4 despite similar binding affinity of the parent inhibitor. The selectivity is attributed to a more stable ternary complex formation (docking scores: CP-10 with CDK6 -10.24, with CDK4 -7.31) and potentially more lysine residues on CDK6 (18 vs 11). CP-10 overcomes CDK6 inhibitor resistance mechanisms including CDK6 overexpression (gene amplification or FAT1 loss) and point mutations (D163G, S178P) that reduce palbociclib binding. It shows potent antiproliferative activity in hematopoietic cancers, especially multiple myeloma, and represents a promising therapeutic strategy for CDK6-dependent cancers [1].
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H13CL9
Molecular Weight
452.2872
Exact Mass
871.387
CAS #
2366268-80-4
PubChem CID
138911323
Appearance
Light yellow to yellow solid powder
LogP
1.8
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
16
Rotatable Bond Count
15
Heavy Atom Count
64
Complexity
1810
Defined Atom Stereocenter Count
0
SMILES
ClC([H])(C([H])(C([H])(C([H])(C([H])([H])Cl)Cl)Cl)Cl)C([H])(C([H])(C([H])(C([H])(C([H])([H])[H])Cl)Cl)Cl)Cl
InChi Key
PACRWHUPEPCFHX-UHFFFAOYSA-N
InChi Code
InChI=1S/C44H49N13O7/c1-26-32-23-47-44(50-39(32)56(29-6-3-4-7-29)42(62)37(26)27(2)58)48-35-12-10-30(22-46-35)54-17-15-53(16-18-54)24-28-25-55(52-51-28)19-21-64-20-14-45-33-9-5-8-31-38(33)43(63)57(41(31)61)34-11-13-36(59)49-40(34)60/h5,8-10,12,22-23,25,29,34,45H,3-4,6-7,11,13-21,24H2,1-2H3,(H,49,59,60)(H,46,47,48,50)
Chemical Name
4-[2-[2-[4-[[4-[6-[(6-acetyl-8-cyclopentyl-5-methyl-7-oxopyrido[2,3-d]pyrimidin-2-yl)amino]pyridin-3-yl]piperazin-1-yl]methyl]triazol-1-yl]ethoxy]ethylamino]-2-(2,6-dioxopiperidin-3-yl)isoindole-1,3-dione
Synonyms
CP-10; CP 10; CP10
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~200 mg/mL (~229.37 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2110 mL 11.0549 mL 22.1097 mL
5 mM 0.4422 mL 2.2110 mL 4.4219 mL
10 mM 0.2211 mL 1.1055 mL 2.2110 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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