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CID-797718

Alias: CID 797718; CID-797718; CID797718.
Cat No.:V3424 Purity: ≥98%
CID797718 is novel potent and selective PKD (Protein kinase D) inhibitor.
CID-797718
CID-797718 Chemical Structure CAS No.: 370586-05-3
Product category: Others 7
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
CID797718 is novel potent and selective PKD (Protein kinase D) inhibitor. Protein kinase D (PKD) belongs to a family of serine/threonine kinases that play an important role in basic cellular processes and are implicated in the pathogenesis of several diseases. Progress in our understanding of the biological functions of PKD has been limited due to the lack of a PKD-specific inhibitor. The benzoxoloazepinolone CID755673 was recently reported as the first potent and kinase-selective inhibitor for this enzyme. For structure-activity analysis purposes, a series of analogs was prepared and their in vitro inhibitory potency evaluated.
CID-797718 (9-hydroxy-1,2,3,4-tetrahydro-chromeno[3,4-b]pyridin-5-one) is a by-product formed during the synthesis of the PKD inhibitor CID755673. It was identified as a moderately potent inhibitor of protein kinase D1 (PKD1), with an IC50 of 13.7 µM in an IMAP-based fluorescence polarization assay, approximately 10-fold less potent than the parent compound CID755673. Structural modifications of CID-797718 (e.g., O-alkylation, N-alkylation, halogenation) led to loss of PKD1 inhibitory activity, and the chromenopyridine scaffold was subsequently abandoned. [1]
CID-797718 (CAS#: 370586-05-3) is a synthetic small molecule identified as a protein kinase D1 (PKD1) inhibitor. It is structurally related to the more potent PKD inhibitor CID-755673, of which it is a synthetic byproduct.
Biological Activity I Assay Protocols (From Reference)
Targets
CID-797718 targets protein kinase D1 (PKD1). In vitro inhibitory activity (IMAP-FP assay): IC50 = 13.7 ± 0.42 µM (mean ± SEM, n=3). [1]
CID-797718 targets protein kinase D1 (PKD1, also known as PRKD1), a serine/threonine kinase that plays important roles in basic cellular processes including Golgi organization, cell survival, and migration. It inhibits PKD1 with an IC50 of 7 µM.
ln Vitro
CID-797718 showed moderate inhibition of PKD1 in an IMAP-based fluorescence polarization assay with an IC50 of 13.7 µM. It was approximately 10-fold less potent than CID755673. [1]
Modifications of CID-797718 including O-allylation, O-silylation, N-carbobenzyloxylation, and ortho-chlorination resulted in complete loss of PKD1 inhibitory activity. [1]
CID-797718 inhibits PKD1 with an IC50 of 7 µM. It also inhibits CDK activating kinase (CAK) and polo-like kinase 1 (PLK1) with IC50 values of 8.4 µM and 21.9 µM, respectively. The compound shows no activity at AKT (IC50 > 50 µM). It is considered a potential PKD binding agent with moderate potency and selectivity.
ln Vivo
In vivo activity data for CID-797718 are limited. As a research tool compound, its primary application is in studying PKD1 function in cellular models. The compound's moderate potency (IC50 = 7 µM) and lack of selectivity over CAK and PLK1 limit its utility for in vivo applications. More potent and selective PKD inhibitors are typically preferred for in vivo studies.
Enzyme Assay
The IMAP-based PKD1 fluorescence polarization (FP) assay was used to assess PKD1 inhibitory activity. PKD1 kinase reactions were assembled in a miniaturized volume (6 µL) by adding 3× concentrations of substrate/ATP (300 nM/60 µM), test compound, and PKD1 enzyme (0.18 milliunits/mL). Kinase reactions were incubated for 90 min at room temperature and stopped by addition of IMAP binding reagent. Plates were then incubated for 2 h and IMAP-based FP data were captured on a fluorescence plate reader. IC50 determinations were conducted within the linear range of the signal readout (n=3). [1]
Cell-free kinase assays for CID-797718 utilize purified recombinant PKD1 enzyme and a suitable peptide substrate. The kinase reaction is performed in the presence of ATP and increasing concentrations of the compound. Phosphorylation of the substrate is quantified using radiometric (33P-ATP) or fluorescence-based detection methods. IC50 values are determined from concentration-response curves. Selectivity is assessed by screening against a panel of related kinases.
Cell Assay
Cellular assays for CID-797718 involve culturing cells expressing PKD1 and treating with the compound at various concentrations (typically up to 50 µM). PKD1 autophosphorylation or phosphorylation of downstream substrates is assessed by Western blot using phospho-specific antibodies. Cell viability, proliferation, or migration assays can be performed to evaluate the functional consequences of PKD1 inhibition.
Animal Protocol
In vivo animal studies for CID-797718 have not been extensively reported. Due to its moderate potency and limited selectivity, the compound is primarily used as a research tool in cell-based assays. For in vivo applications, more potent and selective PKD inhibitors such as CID-755673 or CRT0066101 are typically preferred.
ADME/Pharmacokinetics
Pharmacokinetic properties of CID-797718 have not been comprehensively characterized. As a small molecule (MW 217.22, formula C12H11NO3) with moderate lipophilicity, it is expected to have reasonable membrane permeability. The compound is soluble in DMSO (≥49 mg/mL). Detailed PK parameters such as half-life, clearance, and bioavailability remain to be determined.
Toxicity/Toxicokinetics
Toxicity data for CID-797718 are limited. As a research compound with moderate kinase inhibitor activity, standard toxicological assessments would be required for development. The compound's off-target activity against CAK and PLK1 (IC50s of 8.4 and 21.9 µM, respectively) raises potential concerns about cell cycle effects and toxicity at higher concentrations.
References
2011;3(2):186-228.
Additional Infomation
CID-797718 is a chromenopyridine derivative and a by-product in the synthesis of CID755673. It served as a starting point for first-generation SAR studies of PKD inhibitors. However, all attempts to improve its activity by substitution of the phenolic hydroxyl group, N-alkylation, or ortho-halogenation resulted in complete loss of PKD1 activity, leading to abandonment of the chromenopyridine scaffold. [1]
CID-797718 (molecular formula C12H11NO3, MW 217.22) is a member of the chromeno-pyridine chemical class. It was identified as a synthetic byproduct during the development of the more potent PKD inhibitor CID-755673. Despite its moderate potency, CID-797718 serves as a valuable tool for understanding PKD1 structure-activity relationships. The compound is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H11NO3
Molecular Weight
217.2206
Exact Mass
217.073
CAS #
370586-05-3
PubChem CID
797718
Appearance
Light brown to brown solid powder
Density
1.4±0.1 g/cm3
Boiling Point
517.6±50.0 °C at 760 mmHg
Flash Point
266.8±30.1 °C
Vapour Pressure
0.0±1.4 mmHg at 25°C
Index of Refraction
1.673
LogP
1.24
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
0
Heavy Atom Count
16
Complexity
350
Defined Atom Stereocenter Count
0
SMILES
O1C(C2=C(C3C([H])=C(C([H])=C([H])C1=3)O[H])C([H])([H])C([H])([H])C([H])([H])N2[H])=O
InChi Key
VDZXTSOINJESSP-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H11NO3/c14-7-3-4-10-9(6-7)8-2-1-5-13-11(8)12(15)16-10/h3-4,6,13-14H,1-2,5H2
Chemical Name
9-Hydroxy-1,2,3,4-tetrahydro-5H-chromeno[3,4-b]pyridin-5-one
Synonyms
CID 797718; CID-797718; CID797718.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ≥ 49 mg/mL (~225.58 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.6036 mL 23.0181 mL 46.0363 mL
5 mM 0.9207 mL 4.6036 mL 9.2073 mL
10 mM 0.4604 mL 2.3018 mL 4.6036 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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