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BI-882370

Alias: BI882370; BI 882370; BI-882370
Cat No.:V4710 Purity: ≥98%
BI-882370 (BI 882370), structurally similar to vermurafenib, is a novel, highly potent and selective BRAF inhibitor with anticancer activity.
BI-882370
BI-882370 Chemical Structure CAS No.: 1392429-79-6
Product category: Raf
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

BI-882370 (BI 882370), structurally similar to vermurafenib, is a novel, highly potent and selective BRAF inhibitor with anticancer activity. In the DFG-out (inactive) conformation of the BRAF kinase, it binds to the ATP site of the RAF kinase. Given that commercial BRAF inhibitors bind to the DFG-in conformation, its binding to the DFG-out conformation is special. With IC50 values of 0.4, 0.8, and 0.6 nM, respectively, BI-882370 inhibits the oncogenic BRAFV600E-mutant, WT BRAF, and CRAF kinases. SRC family kinases are also inhibited by BI-882370. With 100× higher potency (1-10 nmol/L) than vemurafenib, BI 882370 prevents the proliferation of human BRAF-mutant melanoma cells.

Biological Activity I Assay Protocols (From Reference)
Targets
Braf (Ki = 2 nM); JNK1 (IC50 = 45 nM); JNK2 (Ki = 4 nM); JNK2 (Ki = 160 nM); JNK3 (Ki = 52 nM)
BI-882370 is a highly potent and selective RAF kinase inhibitor. It binds to the DFG-out (inactive) conformation of BRAF kinase. Biochemical inhibitory potencies (IC₅₀) are: BRAFV600E 0.4 nM, BRAFWT 0.8 nM, CRAF 0.6 nM. Dissociation constants (KD) determined by SPR are: BRAFV600E 4 nM, BRAFWT 6 nM, CRAF 3 nM. [1]
ln Vitro
BI-882370 (0.9-6000 nM; 3 days) has an EC50 range of 1–10 nM and inhibits the proliferation of human melanoma and colorectal cancer cells that have the BRAF mutation[1].
BI 882370 (0.1-100 nM, 0.1-3000 nM; 2 hours) reduces the expression of p-MEK1/2, p-ERK1/2, and cyclin D1/D2 in BRAFV600E-mutant A375 cells; in WT BRO cells, it increases the phosphorylation of ERK1/2 and phosphorylates MEK1/2 (3–300 nM)[1].
In BRAFV600E-mutant A375 cells, BI 882370 (0.1-100 nM, 0.1-3000 nM; 24 hours) inhibits cyclin D1/D2 expression and increases Kip1/p27 expression at concentrations of 1 nM or higher. Expression of cyclins D1/D2 or Kip1/p27 is unaffected in WT BRO cells.
BI-882370 inhibited proliferation of human BRAF-mutant melanoma cells (e.g., A375, SK-MEL-28, G-361) with EC₅₀ values in the range of 0.9 to 6 nM, which was approximately 100-fold more potent than vemurafenib. Wild-type BRAF cell lines (e.g., BRO, HCT-116) were not affected at concentrations up to 1,000 nM, with EC₅₀ values > 5,000 nM. [1]
In A375 melanoma cells (BRAFV600E), treatment with BI-882370 for 2 hours resulted in a dose-dependent reduction of phospho-MEK1/2 and phospho-ERK1/2 levels in immunoblots, with complete suppression observed at 3 nM. After 24 hours of treatment, it suppressed cyclin D1/D2 expression and induced Kip1/p27 expression, indicating G1 phase cell cycle arrest. [1]
In cell-based ELISA assays, BI-882370 inhibited ERK phosphorylation with EC₅₀ values of 0.5 nM in A375 cells and 0.7 nM in SK-MEL-28 cells. [1]
BI-882370 did not induce significant RAF heterodimer (CRAF/BRAF or CRAF/ARAF) formation in BRAF wild-type, NRAS-mutant BRO melanoma cells at pharmacologically relevant concentrations, unlike the tool compound GDC-0879. However, it did induce phosphorylation of MEK and ERK in these cells at concentrations between 3 and 300 nM, without affecting cyclin D1/D2 or Kip1/p27 expression. [1]
The effect of BI-882370 on pathway inhibition was long-lasting. After a 2-hour treatment and subsequent washout in A375 cells, suppression of ERK phosphorylation persisted, with EC₅₀ values still in the 10-20 nM range 24 hours post-washout. This contrasts with vemurafenib, where pathway activity returned to baseline within 1 hour after washout. [1]
ln Vivo
BI-882370 (deliver orally; 25 mg/kg, 50 mg/kg; twice daily; 2 weeks) is more effective than Vemurafenib, Dabrafenib, or Trametinib in a number of mouse models of colorectal and BRAF-mutant melanoma[1].
BI-882370 (deliver orally; 25 mg/kg; twice daily; 40 days) develops resistance within three weeks, but trametinib-assisted second-line therapy for five weeks does not reveal resistance[1].
BI-882370 (deliver orally; 60 mg/kg; once daily; 2 weeks) shows no toxicity in rats when measured by clinical chemistry, hematology, pathology, and toxicogenomics[1].
In mouse xenograft models of BRAFV600E melanoma (A375), oral administration of BI-882370 at 25 mg/kg twice daily (bid) induced complete or partial regression of all tumors, showing superior efficacy compared to vemurafenib (120 mg/kg once daily, qd) and dabrafenib (60 mg/kg qd). [1]
In the G-361 melanoma model (heterozygous BRAFV600V/E), BI-882370 (12.5 or 25 mg/kg bid) induced tumor regression, whereas vemurafenib only led to initial stabilization followed by regrowth. [1]
In a model of acquired resistance, A375 tumors that progressed after initial vemurafenib treatment were re-treated. BI-882370 (25 mg/kg bid) as a single agent induced tumor regression, but resistance developed within 2-3 weeks. The combination of BI-882370 (25 mg/kg bid) with the MEK inhibitor trametinib (0.25 mg/kg bid) resulted in more pronounced regression without regrowth during a 5-week second-line treatment period. [1]
In BRAFV600E colorectal cancer models, BI-882370 (25 mg/kg bid) induced complete or partial regression in COLO 205 tumors and showed significant tumor growth inhibition (TGI) in the less sensitive HT-29 model. [1]
Combination therapy with BI-882370 and the EGFR inhibitor cetuximab or the ErbB inhibitor afatinib, or with trametinib, synergistically improved efficacy in the HT-29 colorectal cancer model. [1]
Immunohistochemical analysis of tumor samples from treated mice showed strong suppression of phospho-ERK signal. [1]
Enzyme Assay
A RAF-MEK-ERK cascade assay was used to determine RAF kinase inhibition. The activity of ERK on a fluorogenic substrate was measured using Z-LYTE technology. Briefly, the assay components (RAF, MEK, ERK kinases and substrate) were combined in buffer, and compounds were added in a dose-response manner. After incubation, the fluorescence signal was measured, and IC₅₀ values were calculated by non-linear regression. [1]
Surface plasmon resonance (SPR) was used to determine the binding affinity (KD) of compounds to purified BRAF and CRAF kinase domains. The protein was immobilized on a sensor chip, and compounds at various concentrations were flowed over the surface. The association and dissociation rates were monitored in real-time, and equilibrium dissociation constants were calculated. [1]
Cell Assay
For proliferation assays, cells were seeded into 96-well plates. The next day, serially diluted compounds were added (final DMSO concentration 1%). After 3 days of treatment, the antiproliferative effect was determined. For most cell lines, metabolic activity of remaining cells was measured using alamarBlue reagent. Fluorescence was read, and EC₅₀ values were calculated by non-linear regression. For HT-29 and COLO 205 cells, a 3H-thymidine incorporation assay was used instead. After 3 days of compound treatment, 3H-thymidine was added for 16 hours. Cells were then lysed, DNA was harvested onto filter plates, and radioactivity was measured using a microplate scintillation counter to determine EC₅₀. [1]
For phospho-ERK cell-based ELISA, A375 or SK-MEL-28 cells were plated, treated with compounds for 2 hours, and then fixed. Cells were permeabilized, blocked, and incubated overnight with an anti-phospho-ERK primary antibody. After washing, an HRP-conjugated secondary antibody was added, followed by TMB substrate. The reaction was stopped, and absorbance was measured at 450 nm to determine EC₅₀ values. [1]
For immunoblotting, cells were treated with compounds for 2 or 24 hours, lysed, and proteins were separated by SDS-PAGE. After transfer to a membrane, blots were probed with antibodies against phospho-MEK, MEK, phospho-ERK, ERK, cyclin D1/2, Kip1/p27, and α-tubulin (loading control), followed by ECL detection. [1]
For co-immunoprecipitation to assess RAF dimerization, cells were treated for 1 hour, lysed, and CRAF was immunoprecipitated using a specific antibody. The immunoprecipitates were then analyzed by Western blotting using antibodies against ARAF, BRAF, and CRAF. [1]
Animal Protocol
Human melanoma xenografts in nude mice with BRAF-mutant melanomas and colorectal carcinomas cells (A375, COLO 205; G-361, HT-29 cells)[1]
25 mg/kg; 50 mg/kg
Deliver orally; 25 mg/kg, 50 mg/kg; twice daily; 2 weeks
For efficacy studies in mouse xenograft models, female immunodeficient mice were subcutaneously injected with tumor cells (e.g., A375, COLO 205). When tumors were well-established (approx. 50-100 mm³), mice were randomized into treatment groups. [1]
BI-882370 was formulated as a solution in 0.5% Natrosol (hydroxyethylcellulose), adjusted to pH 3 with citric acid. [1]
Compounds were administered orally (intragastrically) at a volume of 10 mL/kg body weight. BI-882370 was typically dosed twice daily (bid) at 6.25, 12.5, or 25 mg/kg. Treatment duration varied from 2 to 6 weeks depending on the experiment. [1]
Tumor diameters were measured 3 times per week, and volumes were calculated. Body weight was monitored as a measure of tolerability. [1]
For pharmacodynamic and pharmacokinetic analyses, blood samples and tumors were collected at specified time points after the last dose for drug concentration measurement or for immunohistochemical analysis. [1]
ADME/Pharmacokinetics
In tumor-bearing mice, treatment with BI-882370 at a dose of 25 mg/kg twice daily for 2–3 weeks resulted in drug exposure (AUC 0–24 h) ranging from 12,000 to 25,000 nmol·h/L at the end of treatment. [1] Following a single oral administration of BI-882370 (50 mg/kg) to mice, drug concentrations in tumor tissues were higher than those in plasma at all time points, indicating good tissue distribution. [1] In rats, a dose of 60 mg/kg once daily for 2 weeks resulted in a drug exposure (AUC) of 43,000 nmol·h/L. [1]
Toxicity/Toxicokinetics
In mice, BI-882370 was well tolerated at doses up to 50 mg/kg twice daily for several weeks, with no significant weight loss or clinical signs of toxicity observed. The maximum tolerated dose (MTD) was not determined in these studies. [1] Histopathological examination of multiple organs (skin, heart, lung, bladder, stomach, liver, kidneys) in tumor-bearing mice treated with a high dose (25 mg/kg twice daily) of BI-882370 for 2 weeks showed no drug-induced hyperplasia or other pathological changes. [1]
In a two-week exploratory toxicology study in male rats, daily oral doses of up to 60 mg/kg of BI-882370 (resulting in AUC > 43,000 nmol·h/L) did not cause any adverse clinical manifestations, nor were any relevant results found in clinical chemistry, hematology, histopathology, or toxicogenomics analyses of the liver and skin. [1]
References

[1]. A Novel RAF Kinase Inhibitor with DFG-Out-Binding Mode: High Efficacy in BRAF-Mutant Tumor Xenograft Models in the Absence of Normal Tissue Hyperproliferation. Mol Cancer Ther. 2016 Mar;15(3):354-65.

Additional Infomation
The pan-RAF inhibitor XP-102 is a highly bioavailable, second-generation Raf family serine/threonine protein kinase inhibitor that inhibits all Raf protein kinases, including A-Raf, B-Raf, and C-Raf, and possesses potential antitumor activity. After administration, XP-102 specifically binds to the ATP-binding site of Raf kinases in the inactive DFG-out conformation, inhibiting Raf activity, including B-Raf mutants such as the B-Raf V600E mutation. This prevents the activation of Raf-mediated signal transduction pathways, thereby inhibiting tumor cell growth. Raf protein kinases play a crucial role in the RAF/mitogen-activated protein kinase kinase (MEK)/extracellular signal-regulated kinase (ERK) signaling pathway, which is frequently aberrantly activated in human cancers and plays a vital role in tumor cell proliferation and survival. BRAF gene mutations are primarily caused by the substitution of valine for glutamate at amino acid position 600. Increased activity of the carcinogenic BRAF (V600E) kinase leads to overactivation of the MAPK signaling pathway. BI-882370 is a DFG-out (type II) kinase inhibitor that, unlike first-generation inhibitors such as dabrafenib and vemurafenib (DFG-in (type I) binders), binds to the inactive conformation of BRAF. [1] Its binding mode stabilizes the DFG-out conformation through specific hydrogen bonds and T-stacking interactions with Phe595, thereby enhancing its potency. [1] A key feature of BI-882370 is that, at pharmacologically relevant concentrations, it does not induce the formation of RAF heterodimers in BRAF wild-type cells, whereas some other RAF inhibitors can lead to anomalous activation of the MAPK pathway and side effects such as skin damage due to overproliferation. [1] BI-882370 exhibits durable effects in both cells and in vivo, providing sustained inhibition of the relevant pathway. [1]
In various BRAF-mutant xenograft models, BI-882370 as monotherapy was superior to vemurafenib, dabrafenib, and trametinib when the administered dose reached an amount equivalent to the patient's exposure. [1]
BI-882370 in combination with trametinib showed good activity in acquired vemurafenib resistance models. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C28H33F2N7O2S
Molecular Weight
569.669131040573
Exact Mass
569.238
Elemental Analysis
C, 59.03; H, 5.84; F, 6.67; N, 17.21; O, 5.62; S, 5.63
CAS #
1392429-79-6
Related CAS #
1392429-79-6
PubChem CID
60152613
Appearance
Off-white to gray solid powder
Density
1.4±0.1 g/cm3
Boiling Point
666.8±65.0 °C at 760 mmHg
Flash Point
357.0±34.3 °C
Vapour Pressure
0.0±2.0 mmHg at 25°C
Index of Refraction
1.660
LogP
2.59
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
9
Heavy Atom Count
40
Complexity
913
Defined Atom Stereocenter Count
0
SMILES
S(CCC)(NC1=CC=C(C(=C1F)N1C=C(C2=CN=CN=C2)C2=C1C=CC(=N2)N(C)C1CCN(CC)CC1)F)(=O)=O
InChi Key
AEJACXAFHXBVHF-UHFFFAOYSA-N
InChi Code
InChI=1S/C28H33F2N7O2S/c1-4-14-40(38,39)34-23-7-6-22(29)28(26(23)30)37-17-21(19-15-31-18-32-16-19)27-24(37)8-9-25(33-27)35(3)20-10-12-36(5-2)13-11-20/h6-9,15-18,20,34H,4-5,10-14H2,1-3H3
Chemical Name
N-[3-[5-[(1-ethylpiperidin-4-yl)-methylamino]-3-pyrimidin-5-ylpyrrolo[3,2-b]pyridin-1-yl]-2,4-difluorophenyl]propane-1-sulfonamide
Synonyms
BI882370; BI 882370; BI-882370
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~5 mg/mL (~8.78 mM)
H2O : < 0.1 mg/mL
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7554 mL 8.7770 mL 17.5540 mL
5 mM 0.3511 mL 1.7554 mL 3.5108 mL
10 mM 0.1755 mL 0.8777 mL 1.7554 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Structure of BI 882370, dabrafenib, and their co-crystals with BRAF WT kinase. Mol Cancer Ther . 2016 Mar;15(3):354-65.
  • First-line therapy of human melanoma xenografts in nude mice. A, mice bearing A375 tumors (BRAFV600E homozygous) were treated with BI 882370 at 25 mg/kg twice daily (bid), with vemurafenib at 120 mg/kg once daily (qd), or with dabrafenib at 60 mg/kg once daily. Mol Cancer Ther . 2016 Mar;15(3):354-65.
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