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Tubulin inhibitor 35

Alias: Tubulin inhibitor 35; Tubulin inhibitor-35; Tubulin inhibitor35
Cat No.:V54845 Purity: ≥98%
Tubulin inhibitor 35 (compound 6b) is a dual (bifunctional) inhibitor of topoisomerase I (IC50=~50 μM) and tubulin polymerization (IC50=5.69 μM).
Tubulin inhibitor 35
Tubulin inhibitor 35 Chemical Structure CAS No.: 2247047-77-2
Product category: Apoptosis
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
500mg
1g
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Product Description
Tubulin inhibitor 35 (compound 6b) is a dual (bifunctional) inhibitor of topoisomerase I (IC50=~50 μM) and tubulin polymerization (IC50=5.69 μM). Tubulin inhibitor 35 inhibits the migration and invasion of MGC-803 and RKO cell lines, and causes apoptosis by arresting the cell cycle in the G2/M phase. Tubulin inhibitor 35 has a strong inhibitory effect on gastrointestinal tumors (IC50 for MGC-803=0.09 μM, IC50 for RKO=0.2 μM).
Tubulin inhibitor 35 (CAS 2247047-77-2) is a small molecule inhibitor of tubulin polymerization with potential anticancer activity. As a tubulin inhibitor, the compound disrupts the microtubule network essential for cell division, leading to mitotic arrest and apoptosis. The compound is part of a class of anti-mitotic agents that target the tubulin-microtubule system. Tubulin inhibitors are widely used in cancer chemotherapy and are being investigated for various malignancies.
Biological Activity I Assay Protocols (From Reference)
Targets
Tubulin inhibitor 35 targets tubulin, the protein that polymerizes to form microtubules. Microtubules are essential components of the cytoskeleton and play critical roles in cell division, intracellular transport, and cellular morphology. By binding to tubulin, the compound inhibits microtubule polymerization and disrupts the mitotic spindle, leading to cell cycle arrest at the G2/M phase and subsequent apoptosis.
ln Vitro
In cell-free biochemical assays, Tubulin inhibitor 35 inhibits tubulin polymerization. The compound prevents the polymerization of purified tubulin into microtubules. This activity is typically measured using turbidimetric assays that monitor the increase in absorbance as tubulin polymerizes into microtubules. The IC50 for inhibition of tubulin polymerization is determined from dose-response curves.
ln Vivo
In cell-based assays, Tubulin inhibitor 35 exhibits anti-proliferative activity against cancer cell lines. The compound disrupts the cellular microtubule network and induces mitotic arrest. Cells treated with the compound accumulate at the G2/M phase of the cell cycle and undergo apoptosis. The compound's effects on cell proliferation, cell cycle distribution, and apoptosis are evaluated in various cancer cell lines.
Enzyme Assay
The cell-free tubulin polymerization assay involves incubation of purified tubulin with the compound at various concentrations in assembly buffer containing GTP. The reaction is incubated at 37°C, and microtubule polymerization is monitored by measuring absorbance at 340 nm. The inhibition of tubulin polymerization is determined from dose-response curves. The compound's binding site on tubulin can be studied using competitive binding assays with known tubulin-binding agents.
Cell Assay
Cell-based assays for Tubulin inhibitor 35 involve culturing cancer cell lines and treating them with the compound at concentrations ranging from 0.001 to 10 μM. Cells are incubated for 24-72 hours, and cell viability is assessed using MTT or CCK-8 assays. Cell cycle analysis is performed by flow cytometry. The effect on the microtubule network is assessed by immunofluorescence staining of tubulin. Apoptosis is evaluated by Annexin V staining or caspase activity assays.
Animal Protocol
In animal models, Tubulin inhibitor 35 has been evaluated for its anti-tumor activity. Typical studies involve administration of the compound to tumor-bearing mice via intraperitoneal or intravenous routes at doses determined from toxicity studies. Tumor volumes are measured, and tissues are collected for analysis of tubulin polymerization inhibition, mitotic arrest, and apoptosis. Efficacy is assessed by tumor growth inhibition and survival延长.
ADME/Pharmacokinetics
Pharmacokinetic properties of Tubulin inhibitor 35 have not been extensively reported. As a small molecule tubulin inhibitor, the compound would be expected to have moderate oral bioavailability and tissue penetration. The compound's pharmacokinetic properties depend on its specific chemical structure. Further pharmacokinetic studies would be required to determine plasma half-life, clearance, and metabolic pathways.
Toxicity/Toxicokinetics
Tubulin inhibitor 35 is intended for research use only and lacks established toxicity profiles for therapeutic applications. Standard laboratory safety precautions should be observed when handling this chemical reagent. As a tubulin inhibitor, the compound may have toxicity toward rapidly dividing cells, which could translate to bone marrow suppression and gastrointestinal toxicity. Standard toxicity studies would be required for therapeutic development.
References
[1]. Deng J, et al. N(14)-substituted evodiamine derivatives as dual topoisomerase 1/tubulin-Inhibiting anti-gastrointestinal tumor agents. Eur J Med Chem. 2023 Jul 5;255:115366.
Additional Infomation
Tubulin inhibitor 35 is a research-grade compound supplied for cancer research. It is not an approved pharmaceutical and has no clinical trial history. The compound is a tubulin polymerization inhibitor with potential anticancer activity. This product is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H21N3O
Molecular Weight
331.410944700241
Exact Mass
331.17
Elemental Analysis
C, 76.11; H, 6.39; N, 12.68; O, 4.83
CAS #
2247047-77-2
PubChem CID
168476159
Appearance
Typically exists as solid at room temperature
LogP
4
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
2
Heavy Atom Count
25
Complexity
523
Defined Atom Stereocenter Count
0
SMILES
CCCN1C2C3=C(CCN2C(=O)C4=CC=CC=C41)C5=CC=CC=C5N3
InChi Key
JSGWJWGKFPBVTK-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H21N3O/c1-2-12-23-18-10-6-4-8-16(18)21(25)24-13-11-15-14-7-3-5-9-17(14)22-19(15)20(23)24/h3-10,20,22H,2,11-13H2,1H3
Chemical Name
14-propyl-8,13,13b,14-tetrahydroindolo[2',3':3,4]pyrido[2,1-b]quinazolin-5(7H)-one
Synonyms
Tubulin inhibitor 35; Tubulin inhibitor-35; Tubulin inhibitor35
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0174 mL 15.0871 mL 30.1741 mL
5 mM 0.6035 mL 3.0174 mL 6.0348 mL
10 mM 0.3017 mL 1.5087 mL 3.0174 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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