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Tesirine intermediate-1

Alias: Tesirine intermediate-1
Cat No.:V55755 Purity: ≥98%
Tesirine intermediate-1 is an intermediate of Tesirine (HY-128952).
Tesirine intermediate-1
Tesirine intermediate-1 Chemical Structure CAS No.: 1430738-05-8
Product category: DNA alkylator
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
10mg
Other Sizes
Official Supplier of:
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Product Description
Tesirine intermediate-1 is an intermediate of Tesirine (HY-128952). Tesirine (SG3249) is a highly cytotoxic pyrrolebenzodiazepine (PBD) dimer as well as a DNA minor groove cross-linker. The synthesis of antibody-drug conjugates (ADCs) can be accomplished with tesirine. Strong anti-cancer cell activity is SG3199 (HY-101161), the payload's warhead component.
Tesirine intermediate-1 is a key synthetic building block used in the production of Tesirine (SG3249). Tesirine is a pyrrolobenzodiazepine (PBD) dimer that acts as a DNA minor groove cross-linker with potent cytotoxicity. Tesirine is used as a cytotoxic payload in antibody-drug conjugates (ADCs). The intermediate is for research use only and not approved for human therapeutic use.
Biological Activity I Assay Protocols (From Reference)
Targets
No direct biological target; the compound is a synthetic intermediate for Tesirine (SG3249). Tesirine targets DNA as a minor groove cross-linker. The PBD dimer binds to the minor groove of DNA and forms cross-links, preventing DNA replication and transcription, leading to cell death. Tesirine intermediate-1 itself has no known biological activity.
ln Vitro
Tesirine intermediate-1 itself has no reported in vitro biological activity as it is a synthetic precursor. The final product Tesirine (SG3249) is a highly cytotoxic PBD dimer that cross-links DNA. Tesirine is used as a warhead component in ADCs. The intermediate is used for synthesis of Tesirine and related compounds.
ln Vivo
Tesirine intermediate-1 itself has no reported in vivo activity. The final product Tesirine (SG3249) is used as a cytotoxic payload in ADCs for targeted cancer therapy. The ADC delivers the PBD dimer to tumor cells, where it is released and exerts its DNA-crosslinking cytotoxicity. The intermediate is not used directly in vivo.
Enzyme Assay
Not applicable for Tesirine intermediate-1 as it is a synthetic intermediate. For Tesirine (SG3249), in vitro assays include DNA cross-linking assays (gel-based or HPLC-based), cell viability assays (e.g., MTT, CellTiter-Glo) in cancer cell lines, and apoptosis assays. The PBD dimer's cytotoxicity is typically assessed in a panel of cancer cell lines with IC50 values in the pM to nM range.
Cell Assay
Not applicable for Tesirine intermediate-1. For Tesirine (SG3249), cells are cultured and treated with the compound at concentrations ranging from pM to nM for 48–96 hours. Cytotoxicity is assessed by cell viability assays. DNA damage is evaluated by gamma-H2AX staining. Cell cycle analysis and apoptosis assays are performed to characterize the mechanism of cell death.
Animal Protocol
Not applicable for Tesirine intermediate-1. For Tesirine-containing ADCs, in vivo studies are conducted in xenograft mouse models. The ADC is administered intravenously at doses typically ranging from 1–10 mg/kg. Tumor growth inhibition, survival, and toxicity are evaluated. The ADC delivers the PBD payload specifically to tumor cells.
ADME/Pharmacokinetics
Not applicable for Tesirine intermediate-1. For Tesirine (SG3249), PK properties are typically evaluated in the context of ADC pharmacology. The PBD dimer itself is highly potent and requires targeted delivery to minimize systemic toxicity. ADC PK is characterized by measuring total antibody, conjugated antibody, and released payload in plasma.
Toxicity/Toxicokinetics
Toxicology data for Tesirine intermediate-1 have not been published as it is a synthetic intermediate. Tesirine (SG3249) is highly cytotoxic and is used as a payload in ADCs. The toxicity of PBD dimers is well-established, and their use is limited to targeted delivery via ADCs to minimize off-target effects.
References

[1]. Process for the preparation of intermediates useful for the synthesis of pyrrolobenzodiazepine dimers. World Intellectual Property Organization, WO2013053872 A1. 2013-04-18.

[2]. Design and Synthesis of Tesirine, a Clinical Antibody-Drug Conjugate Pyrrolobenzodiazepine Dimer Payload. ACS Med Chem Lett. 2016;7(11):983-987. Published 2016 May 24.

Additional Infomation
Tesirine intermediate-1 (CAS: 1430738-05-8, molecular formula C28H48N2O7Si2, molecular weight 580.86) is a synthetic intermediate for Tesirine (SG3249). Tesirine is a PBD dimer DNA cross-linker used as ADC payload. The compound is not in clinical trials and has no regulatory approval.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C28H48N2O7SI2
Molecular Weight
580.86093044281
Exact Mass
580.3
CAS #
1430738-05-8
PubChem CID
86717745
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
11
Heavy Atom Count
39
Complexity
860
Defined Atom Stereocenter Count
1
SMILES
[Si](C(C)C)(C(C)C)(C(C)C)OC1C=C(C(=CC=1OC)C(N1CC(C[C@H]1CO[Si](C)(C)C(C)(C)C)=O)=O)[N+](=O)[O-]
InChi Key
IUVUOBISHKAUDN-NRFANRHFSA-N
InChi Code
InChI=1S/C28H48N2O7Si2/c1-18(2)39(19(3)4,20(5)6)37-26-15-24(30(33)34)23(14-25(26)35-10)27(32)29-16-22(31)13-21(29)17-36-38(11,12)28(7,8)9/h14-15,18-21H,13,16-17H2,1-12H3/t21-/m0/s1
Chemical Name
5S)-5-[[tert-butyl(dimethyl)silyl]oxymethyl]-1-[5-methoxy-2-nitro-4-tri(propan-2-yl)silyloxybenzoyl]pyrrolidin-3-one
Synonyms
Tesirine intermediate-1
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7216 mL 8.6079 mL 17.2159 mL
5 mM 0.3443 mL 1.7216 mL 3.4432 mL
10 mM 0.1722 mL 0.8608 mL 1.7216 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Structures of SG2202 and ADC warhead SG3199. LogD values calculated at pH 7.4. Structures of payloads (drug-linker), SG3249 (tesirine), and SGD-1910 (talirine). ACS Med Chem Lett . 2016 May 24;7(11):983-987.
  • Final Steps, Synthesis of SG3249 (Tesirine). ACS Med Chem Lett . 2016 May 24;7(11):983-987.
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