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Sofosbuvir-d6 (Sofosbuvir D6; PSI-7977-d6; GS-7977-d6)

Cat No.:V54214 Purity: ≥98%
Sofosbuvir-d6 is the deuterium labelled form of Sofosbuvir (PSI-7977).
Sofosbuvir-d6 (Sofosbuvir D6; PSI-7977-d6; GS-7977-d6)
Sofosbuvir-d6 (Sofosbuvir D6; PSI-7977-d6; GS-7977-d6) Chemical Structure CAS No.: 1868135-06-1
Product category: HCV
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes

Other Forms of Sofosbuvir-d6 (Sofosbuvir D6; PSI-7977-d6; GS-7977-d6):

  • Sofosbuvir impurity E (sofosbuvir impurity E)
  • Sofosbuvir impurity D
  • Sofosbuvir impurity H
  • Sofosbuvir impurity L (sofosbuvir impurity L)
  • Sofosbuvir-13C,d3 (PSI-7977-13C,d3; GS-7977-13C,d3)
  • Sofosbuvir (PSI-7977; GS-7977)
  • psi-7976
  • Sofosbuvir impurity C
  • Sofosbuvir impurity A
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Sofosbuvir-d6 is the deuterium labelled form of Sofosbuvir (PSI-7977).
Sofosbuvir-d6 (CAS 1868135-06-1) is a deuterated form of sofosbuvir, a nucleotide analogue inhibitor of the hepatitis C virus (HCV) NS5B polymerase. Sofosbuvir-d6 is also known as PSI-7977-d6 or GS-7977-d6. The deuterium labeling replaces six hydrogen atoms with deuterium, making the compound useful as an internal standard for analytical methods such as LC-MS/MS. Sofosbuvir is a cornerstone of direct-acting antiviral (DAA) therapy for chronic hepatitis C, achieving high cure rates. Sofosbuvir-d6 is used primarily in research and analytical applications.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of sofosbuvir-d6 is the HCV NS5B RNA-dependent RNA polymerase, the same target as the parent compound sofosbuvir. After cellular uptake, sofosbuvir is metabolized to the active uridine analogue triphosphate, which acts as a chain terminator during HCV RNA synthesis. The compound has high specificity for the HCV polymerase with minimal activity against human DNA and RNA polymerases. The deuterated form has the same mechanism of action as the parent compound.
ln Vitro
In vitro antiviral activity of sofosbuvir-d6 is expected to be identical to that of sofosbuvir. Sofosbuvir potently inhibits HCV replication in cell culture systems, with EC₅₀ values in the low nanomolar range against HCV genotypes 1-6. The compound shows a high barrier to resistance and is active against many NS5B resistance-associated substitutions. Sofosbuvir-d6 is used as an internal standard in analytical methods rather than for biological activity studies.
ln Vivo
In vivo efficacy of sofosbuvir-d6 is not studied as a therapeutic agent; the parent compound sofosbuvir has been extensively evaluated. Sofosbuvir has demonstrated high cure rates in clinical trials for chronic hepatitis C, both as monotherapy and in combination with other DAAs. The deuterated form is used in bioanalytical methods for quantifying sofosbuvir and its metabolites in biological samples. Sofosbuvir-d6 serves as a stable isotope-labeled internal standard.
Enzyme Assay
For analytical method development, sofosbuvir-d6 is used as an internal standard for LC-MS/MS quantification of sofosbuvir and its metabolites in plasma, serum, or other biological matrices. The deuterated compound has identical chromatographic and mass spectrometric properties to the parent compound but can be distinguished by its mass shift. Standard protocols for bioanalytical method validation are followed according to regulatory guidelines (e.g., FDA or EMA).
Cell Assay
Sofosbuvir-d6 is used in bioanalytical laboratories rather than in cell-based studies. For cell-based studies of antiviral activity, the parent compound sofosbuvir is used. Standard protocols for HCV replicon assays involve Huh7 cells harboring HCV subgenomic replicons. Cells are treated with serial dilutions of sofosbuvir, and HCV RNA replication is quantified by qRT-PCR or luciferase reporter assays. EC₅₀ values are calculated from dose-response curves.
Animal Protocol
Sofosbuvir-d6 is not used in in vivo animal studies as a therapeutic agent. The parent compound sofosbuvir has been studied in animal models of HCV infection, though HCV primarily infects humans and chimpanzees. The deuterated form is used in pharmacokinetic studies as an internal standard for the quantification of sofosbuvir and its metabolites in animal samples. Standard protocols for animal pharmacokinetic studies can be adapted.
ADME/Pharmacokinetics
Pharmacokinetic properties of sofosbuvir-d6 are identical to those of sofosbuvir. Sofosbuvir is well absorbed after oral administration and is rapidly metabolized to the active triphosphate and to the inactive metabolite GS-331007. The compound has a half-life that supports once-daily dosing. Sofosbuvir is eliminated primarily by renal excretion. Specific PK parameters such as Cmax, Tmax, AUC, half-life, and oral bioavailability have been extensively characterized.
Toxicity/Toxicokinetics
The toxicological profile of sofosbuvir-d6 is identical to that of sofosbuvir. Sofosbuvir has a favorable safety profile based on extensive clinical data. Common adverse effects include headache, fatigue, and nausea. Rare but serious adverse effects include bradycardia when used with amiodarone. The compound is contraindicated in patients with severe renal impairment. Comprehensive toxicological data for sofosbuvir are available from regulatory submissions.
Additional Infomation
Sofosbuvir-d6 is a stable isotope-labeled internal standard used in analytical chemistry for the quantification of sofosbuvir and its metabolites in biological samples. The deuterated compound is used in bioanalytical method development and validation, pharmacokinetic studies, and therapeutic drug monitoring. Sofosbuvir (the parent compound) is an FDA-approved drug for the treatment of chronic hepatitis C. Sofosbuvir-d6 is not a therapeutic agent and is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H29FN3O9P
Molecular Weight
535.489500761032
Exact Mass
535.2
CAS #
1868135-06-1
Related CAS #
Sofosbuvir;1190307-88-0;PSI-7976;1190308-01-0;Sofosbuvir impurity C;1496552-28-3;Sofosbuvir impurity A;1496552-16-9;Sofosbuvir-13C,d3
PubChem CID
92044384
Appearance
White to off-white solid powder
LogP
1
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
11
Heavy Atom Count
36
Complexity
913
Defined Atom Stereocenter Count
6
SMILES
C[C@]1([C@H](O)[C@@H](COP(=O)(N[C@@H](C)C(=O)OC(C([2H])([2H])[2H])C([2H])([2H])[2H])OC2C=CC=CC=2)O[C@H]1N1C=CC(=O)NC1=O)F
InChi Key
TTZHDVOVKQGIBA-FMYNZQRGSA-N
InChi Code
InChI=1S/C22H29FN3O9P/c1-13(2)33-19(29)14(3)25-36(31,35-15-8-6-5-7-9-15)32-12-16-18(28)22(4,23)20(34-16)26-11-10-17(27)24-21(26)30/h5-11,13-14,16,18,20,28H,12H2,1-4H3,(H,25,31)(H,24,27,30)/t14-,16+,18+,20+,22+,36-/m0/s1/i1D3,2D3
Chemical Name
1,1,1,3,3,3-hexadeuteriopropan-2-yl (2S)-2-[[[(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyloxolan-2-yl]methoxy-phenoxyphosphoryl]amino]propanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8674 mL 9.3372 mL 18.6745 mL
5 mM 0.3735 mL 1.8674 mL 3.7349 mL
10 mM 0.1867 mL 0.9337 mL 1.8674 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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