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Protoneogracillin

Cat No.:V40023 Purity: ≥98%
Protoneogracillin is a furosterol glycoside with inhibitory effect against the plant pathogenic fungus P. oryzae (MMDC=94.0 μM) and cytotoxic activity against K562 cancer cells (IC50=6.6 μM).
Protoneogracillin
Protoneogracillin Chemical Structure CAS No.: 191334-50-6
Product category: Fungal
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Product Description
Protoneogracillin is a furosterol glycoside with inhibitory effect against the plant pathogenic fungus P. oryzae (MMDC=94.0 μM) and cytotoxic activity against K562 cancer cells (IC50=6.6 μM).
Protoneogracillin (CAS#: 191334-50-6) is a furostanol glycoside (a type of steroidal saponin) isolated from natural sources (e.g., certain plant species). It exhibits antifungal activity against the plant pathogenic fungus Pyricularia oryzae (MMDC = 94.0 microM) and cytotoxic activity against K562 human leukemia cancer cells (IC50 = 6.6 microM). This natural product is a research tool for studying anticancer and antifungal activities of steroidal saponins.
Biological Activity I Assay Protocols (From Reference)
Targets
Not definitively established; believed to involve membrane disruption and apoptosis induction. As a furostanol glycoside, Protoneogracillin is thought to exert its cytotoxic effects by interacting with cell membranes, altering membrane permeability, and inducing apoptosis through the mitochondrial pathway. The sugar moiety may facilitate binding to specific membrane components (e.g., cholesterol) on cancer cells. Its antifungal activity may involve disruption of fungal cell membrane integrity and inhibition of fungal growth.
ln Vitro
Protoneogracillin exhibits activity against K562 (IC50=6.6 μM) and P. oryzae (MMDC=94.0 μM)[1].
Protoneogracillin exhibits cytotoxic activity against K562 human chronic myelogenous leukemia cells with an IC50 of 6.6 microM. It also shows antifungal activity against the plant pathogen Pyricularia oryzae, the causative agent of rice blast disease, with a minimum molar concentration for death (MMDC) of 94.0 microM. The compound's activity profile suggests it is more potent against cancer cells than against the fungal pathogen. The exact mechanism of action is under investigation.
ln Vivo
Not applicable (natural product with in vitro activity; limited in vivo data available). As a natural product, Protoneogracillin has been primarily characterized in vitro; in vivo efficacy studies in animal models are limited. Given its cytotoxic activity against K562 leukemia cells in vitro, it may have potential for further investigation as an anticancer lead compound. No published in vivo efficacy data are available for antifungal or anticancer activity.
Enzyme Assay
Not applicable (natural product without a defined enzyme/receptor target). For quality control and characterization, the compound is analyzed by HPLC-UV and LC-MS. A standard solution of Protoneogracillin in methanol (0.1-1 mg/mL) is injected onto a reversed-phase C18 column (250 × 4.6 mm, 5 microm) with a mobile phase of acetonitrile/water (30:70 to 80:20 gradient) at 1.0 mL/min, with UV detection at 210 nm. The retention time and mass spectrum are recorded.
Cell Assay
K562 human chronic myelogenous leukemia cells are cultured in RPMI-1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin. Cells (1 × 10⁴ to 5 × 10⁴ cells/well) are seeded in 96-well plates and treated with varying concentrations of Protoneogracillin (0.1-100 microM) for 48-72 hours at 37degC, 5% CO2. Cell viability is measured by MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay (absorbance at 570 nm) or CellTiter-Glo luminescent assay. The IC50 is calculated by nonlinear regression. Apoptosis is assessed by Annexin V-FITC/PI flow cytometry.
Animal Protocol
Not applicable (no published in vivo animal efficacy data). For pharmacokinetic or efficacy studies, the compound would typically be formulated in a suitable vehicle (e.g., 0.5% DMSO in saline or 0.5% methylcellulose) and administered intraperitoneally or orally to tumor-bearing mice. However, no published studies have reported in vivo administration of Protoneogracillin. The compound is currently used only for in vitro research.
ADME/Pharmacokinetics
Protoneogracillin is a natural product with a molecular weight of approximately 1065 g/mol. It is a furostanol glycoside containing a steroidal aglycone and a sugar chain. The compound is typically stored as a lyophilized powder at -20degC, protected from light. Solubility is limited in aqueous buffers; DMSO is the preferred solvent for stock solutions (10-50 mM). Dilution into cell culture media should be performed with <0.5% DMSO to avoid cytotoxicity.
Toxicity/Toxicokinetics
Protoneogracillin is a natural product and is not intended for human therapeutic use. Toxicity data are limited to in vitro cytotoxicity assays. In K562 leukemia cells, the compound has an IC50 of 6.6 microM, indicating moderate cytotoxicity against cancer cells. Toxicity against normal human cells (e.g., fibroblasts, hepatocytes) has not been reported. Standard laboratory safety precautions (gloves, lab coat, eye protection) should be used when handling this compound.
References

[1]. Antineoplastic agents. II. Four furostanol glycosides from rhizomes of Dioscorea collettii var. hypoglauca. Planta Med. 1997 Apr;63(2):161-5.

[2]. New furostanol glycosides from the rhizomes of Dioscorea futschauensis R. Kunth. J Asian Nat Prod Res. 2003 Dec;5(4):241-7.

Additional Infomation
It has been reported that yam (Dioscorea futschauensis) and onion (Allium fistulosum) contain protoporphyrin, and there is relevant data on this.
Protoneogracillin is a furostanol glycoside natural product with demonstrated in vitro cytotoxic activity against human leukemia cells (K562, IC50 = 6.6 microM) and antifungal activity against the plant pathogen Pyricularia oryzae (MMDC = 94.0 microM). It belongs to the class of steroidal saponins, which are known for their anticancer, antifungal, and hemolytic activities. Protoneogracillin is a research tool for studying the biological activities of furostanol glycosides and for lead compound discovery in oncology. The compound is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C51H84O23
Molecular Weight
1065.19887924194
Exact Mass
1064.54
CAS #
191334-50-6
PubChem CID
46906323
Appearance
White to off-white solid powder
LogP
-1.2
Hydrogen Bond Donor Count
14
Hydrogen Bond Acceptor Count
23
Rotatable Bond Count
15
Heavy Atom Count
74
Complexity
1920
Defined Atom Stereocenter Count
31
SMILES
C[C@]12[C@@H](C[C@@H]3O[C@@](CC[C@@H](CO[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)C)(O)C(C)C31)[C@H]1[C@@H]([C@@]3(C(=CC1)C[C@@H](O[C@H]1[C@H](O[C@H]4[C@H](O)[C@H](O)[C@@H](O)[C@H](C)O4)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@@H](CO)O1)CC3)C)CC2
InChi Key
GMCGZPQYTRHQRU-RDQBWXAHSA-N
InChi Code
InChI=1S/C51H84O23/c1-20(19-66-45-40(62)38(60)34(56)29(16-52)69-45)8-13-51(65)21(2)32-28(74-51)15-27-25-7-6-23-14-24(9-11-49(23,4)26(25)10-12-50(27,32)5)68-48-44(73-46-41(63)37(59)33(55)22(3)67-46)43(36(58)31(18-54)71-48)72-47-42(64)39(61)35(57)30(17-53)70-47/h6,20-22,24-48,52-65H,7-19H2,1-5H3/t20-,21-,22-,24-,25+,26-,27-,28-,29+,30+,31+,32-,33-,34+,35+,36+,37+,38-,39-,40+,41+,42+,43-,44+,45+,46-,47-,48+,49-,50-,51+/m0/s1
Chemical Name
(2S,3R,4R,5R,6S)-2-[(2R,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-2-[[(1S,2S,4S,6R,7S,8R,9S,12S,13R,16S)-6-hydroxy-7,9,13-trimethyl-6-[(3S)-3-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.9388 mL 4.6940 mL 9.3879 mL
5 mM 0.1878 mL 0.9388 mL 1.8776 mL
10 mM 0.0939 mL 0.4694 mL 0.9388 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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