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(E/Z)-NSAH

Alias: SD49-7; J3.555.273A; 2-hydroxy-1-naphthalaldehyde salicyloylhydrazone; ZINC259636; AKOS001601386
Cat No.:V55140 Purity: ≥98%
(E/Z)-NSAH is an isomer of NSAH (HY-114503).
(E/Z)-NSAH
(E/Z)-NSAH Chemical Structure CAS No.: 54009-54-0
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
(E/Z)-NSAH is an isomer of NSAH (HY-114503). NSAH is a competitive, reversible non-nucleoside ribonucleotide reductase (RR) inhibitor. In cell-free and cell-base backgrounds, its IC50 values are 32 μM and approximately 250 nM, respectively.
(E/Z)-NSAH (CAS 54009-54-0) is a mixture of E and Z geometric isomers of 2-hydroxy-1-naphthalaldehyde salicyloylhydrazone, also known as SD49-7 or HNASH. Its molecular formula is C18H14N2O3 with a molecular weight of 306.32 g/mol. (E/Z)-NSAH is a reversible, competitive non-nucleoside inhibitor of ribonucleotide reductase (RR), an enzyme critical for de novo DNA synthesis. The compound exhibits significantly different inhibitory potencies in cell-free versus cell-based assays.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of (E/Z)-NSAH is ribonucleotide reductase (RR), the enzyme that catalyzes the conversion of ribonucleoside diphosphates to deoxyribonucleoside diphosphates, which are essential for DNA synthesis and repair. Ribonucleotide reductase is a validated target for anticancer and antiviral therapies. (E/Z)-NSAH functions as a non-nucleoside inhibitor that binds reversibly and competitively to the enzyme. The compound's mixed E/Z geometric isomer form may influence its binding affinity and selectivity for the RR enzyme.
ln Vitro
In cell-free enzymatic assays, (E/Z)-NSAH inhibits ribonucleotide reductase with an IC50 of 32 μM. This activity represents the compound's direct inhibitory effect on the purified enzyme in the absence of cellular uptake or metabolism barriers. The cell-free IC50 value is significantly higher than the cell-based IC50, indicating that the compound may be more potent in the cellular environment. The compound acts as a competitive inhibitor, suggesting it competes with the natural substrate for binding to the enzyme's active site.
ln Vivo
In cell-based assays, (E/Z)-NSAH inhibits ribonucleotide reductase activity with an IC50 of approximately 250 nM, which is substantially more potent than its cell-free IC50 of 32 μM. This discrepancy suggests that the compound may be actively accumulated in cells or that cellular metabolism converts it to a more active form. By inhibiting ribonucleotide reductase, (E/Z)-NSAH reduces the cellular pool of deoxyribonucleotides, thereby inhibiting DNA synthesis and cellular proliferation. The compound is a valuable tool for studying nucleotide metabolism and cell proliferation.
Enzyme Assay
The cell-free assay for ribonucleotide reductase inhibition typically involves measuring the conversion of radiolabeled CDP to dCDP in the presence of the inhibitor. The reaction mixture contains purified RR enzyme, substrate (CDP or ADP), reducing agents (dithiothreitol), and the inhibitor at various concentrations. The reaction is incubated at 37°C for 30-60 minutes, and the product is separated from substrate by ion-exchange chromatography or precipitation. The IC50 value is determined by plotting percent inhibition versus inhibitor concentration and fitting the data to a sigmoidal dose-response curve.
Cell Assay
The cell-based assay for (E/Z)-NSAH involves culturing mammalian cells in appropriate media and treating them with the compound at concentrations ranging from 10 nM to 100 μM. Cells are typically incubated for 24-72 hours, and cell viability is assessed using MTT, CCK-8, or ATP-based luminescence assays. The effect on DNA synthesis can be measured by [3H]-thymidine incorporation or BrdU labeling. The IC50 of approximately 250 nM is determined from dose-response curves. The compound's effects on cell cycle progression can be analyzed by flow cytometry.
Animal Protocol
There is no established animal experimental protocol for (E/Z)-NSAH specifically. As a ribonucleotide reductase inhibitor, the compound could potentially be evaluated in animal models of cancer. Typical protocols for RR inhibitors involve administration to tumor-bearing mice via intraperitoneal or oral routes at doses ranging from 10-100 mg/kg, administered daily or every other day for 2-4 weeks. Tumor volumes are measured, and tissues are collected for analysis of RR activity, deoxynucleotide pools, and biomarkers of DNA damage and apoptosis.
ADME/Pharmacokinetics
Pharmacokinetic properties of (E/Z)-NSAH have not been extensively reported in the literature. As a small molecule with molecular weight of 306.32 g/mol and a hydrazone structure, the compound is expected to have moderate oral bioavailability and reasonable tissue penetration. The E/Z isomer mixture may exhibit different pharmacokinetic profiles. The compound's solubility and stability characteristics would influence its absorption and distribution. Further pharmacokinetic studies would be required to determine plasma half-life, clearance, volume of distribution, and metabolic pathways.
Toxicity/Toxicokinetics
Toxicity data for (E/Z)-NSAH are not well documented in the available literature. As an inhibitor of ribonucleotide reductase, the compound would be expected to have antiproliferative effects on rapidly dividing cells, which could translate to toxicity in bone marrow, gastrointestinal epithelium, and other highly proliferative tissues. Standard toxicity studies in rodents would be required to determine the maximum tolerated dose, target organ toxicity, and safety profile. The compound is intended for research use only and is not approved for human therapeutic applications.
References

[1]. Potent competitive inhibition of human ribonucleotide reductase by a nonnucleoside small molecule. Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8241-8246.

Additional Infomation
The structure given in the first document
(E/Z)-NSAH is a research compound used to study ribonucleotide reductase inhibition and nucleotide metabolism. It is an isoform of NSAH and serves as a valuable tool for investigating the role of RR in cellular proliferation and DNA synthesis. The compound's significantly different IC50 values between cell-free (32 μM) and cell-based (~250 nM) assays highlight the importance of cellular context in drug activity. This product is intended for research use only and is not for human therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H14N2O3
Molecular Weight
306.32
Exact Mass
306.1
Elemental Analysis
C, 70.58; H, 4.61; N, 9.15; O, 15.67
CAS #
54009-54-0
Related CAS #
54009-54-0
PubChem CID
135458654
Appearance
Typically exists as solid at room temperature
Density
1.4g/cm3
Boiling Point
526.2ºC at 760 mmHg
Flash Point
272.1ºC
Index of Refraction
1.734
LogP
3.229
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
3
Heavy Atom Count
23
Complexity
440
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C2C(=C1)C=CC(=C2C=NNC(=O)C3=CC=CC=C3O)O
InChi Key
ZZSJOLDICPVVAV-YBFXNURJSA-N
InChi Code
InChI=1S/C18H14N2O3/c21-16-8-4-3-7-14(16)18(23)20-19-11-15-13-6-2-1-5-12(13)9-10-17(15)22/h1-11,21-22H,(H,20,23)/b19-11+
Chemical Name
2-hydroxy-N-[(E)-(2-hydroxynaphthalen-1-yl)methylideneamino]benzamide
Synonyms
SD49-7; J3.555.273A; 2-hydroxy-1-naphthalaldehyde salicyloylhydrazone; ZINC259636; AKOS001601386
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.2646 mL 16.3228 mL 32.6456 mL
5 mM 0.6529 mL 3.2646 mL 6.5291 mL
10 mM 0.3265 mL 1.6323 mL 3.2646 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Structural organization of the regulatory subunit hRRM1 and steady-state kinetic studies of NSAH–hRR. Proc Natl Acad Sci U S A . 2017 Aug 1;114(31):8241-8246.
  • NSAH binding and structural studies with hRRM1. Proc Natl Acad Sci U S A . 2017 Aug 1;114(31):8241-8246.
  • Sigmoidal dose–response curve for NSAH inhibition of hRRM1. Proc Natl Acad Sci U S A . 2017 Aug 1;114(31):8241-8246.
  • Ligplot of NSAH (purple in color) interactions with human RR1. Proc Natl Acad Sci U S A . 2017 Aug 1;114(31):8241-8246.
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