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CK1-IN-3

Cat No.:V55058 Purity: ≥98%
CK1-IN-3 (compound 51) is an AC1 inhibitor (antagonist) with IC50 of 2.22 µM for CK-1δ.
CK1-IN-3
CK1-IN-3 Chemical Structure CAS No.: 349438-74-0
Product category: Casein Kinase
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
500mg
1g
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Product Description
CK1-IN-3 (compound 51) is an AC1 inhibitor (antagonist) with IC50 of 2.22 µM for CK-1δ.
CK1-IN-3 (CAS 349438-74-0) is a potent inhibitor of casein kinase 1 (CK1), specifically CK-1δ. Also known as compound 51, its molecular formula is C17H16N2O3S with a molecular weight of 328.39 g/mol. CK1-IN-3 has an IC50 of 2.22 µM for CK-1δ. CK1 is a serine/threonine kinase involved in multiple cellular processes, including circadian rhythm regulation, Wnt signaling, and DNA damage response. The compound can be used for the research of diseases related to circadian rhythm and inflammation.
Biological Activity I Assay Protocols (From Reference)
Targets
CK1δ 2.22 μM (IC50)
CK1-IN-3 targets casein kinase 1 delta (CK-1δ). CK1 is a serine/threonine kinase involved in multiple cellular processes, including circadian rhythm regulation, Wnt signaling, and DNA damage response. By inhibiting CK-1δ, the compound modulates these signaling pathways. The compound is an AC1 inhibitor with an IC50 of 2.22 µM for CK-1δ.
ln Vitro
In cell-free biochemical assays, CK1-IN-3 inhibits CK-1δ with an IC50 of 2.22 µM. This activity demonstrates the compound's direct inhibition of CK-1δ enzymatic activity. The compound's selectivity for CK-1δ over other kinases can be assessed using kinase profiling assays. The compound can be used for the research of diseases related to circadian rhythm and inflammation.
ln Vivo
CK1-IN-3 (compound 35) (100 nM; feed), dramatically increases the lifespan of Drosophila to 36.17 days [2].
In cell-based assays, CK1-IN-3 has been shown to significantly extend the lifespan of Drosophila to 36.17 days when administered at 100 nM in feed. This effect is likely mediated through the modulation of circadian rhythm pathways. The compound's effects on CK-1δ activity and downstream signaling are evaluated in various cell lines. It can be used for the research of diseases related to circadian rhythm and inflammation.
Enzyme Assay
The cell-free assay for CK1 inhibition involves measuring the kinase activity of purified CK-1δ enzyme in the presence of the compound. The assay uses a peptide substrate and ATP, and the phosphorylation of the substrate is measured using radioactivity, fluorescence, or luminescence. The IC50 of 2.22 µM is determined from dose-response curves.
Cell Assay
Cell-based assays for CK1-IN-3 involve culturing relevant cell lines and treating them with the compound at concentrations ranging from 0.01 to 100 µM. The compound's effects on CK-1δ activity are assessed by measuring the phosphorylation of downstream substrates by Western blotting. The effects on circadian rhythm can be assessed using reporter assays or by monitoring circadian gene expression. The compound's effects on cell viability and proliferation are also assessed.
Animal Protocol
In animal models, CK1-IN-3 has been evaluated for its effects on lifespan and circadian rhythm. In Drosophila, the compound significantly extended lifespan to 36.17 days when administered at 100 nM in feed. This suggests potential applications in aging and circadian rhythm research. Further studies in mammalian models would be required to assess its effects on circadian rhythm and inflammation-related diseases.
ADME/Pharmacokinetics
Pharmacokinetic properties of CK1-IN-3 have not been extensively reported. As a small molecule with a molecular weight of 328.39 g/mol, the compound would be expected to have moderate oral bioavailability and tissue penetration. The compound is typically stored at -20°C, protect from light. Further pharmacokinetic studies would be required to determine plasma half-life, clearance, and metabolic pathways.
Toxicity/Toxicokinetics
CK1-IN-3 is intended for research use only and lacks established toxicity profiles for therapeutic applications. Standard laboratory safety precautions should be observed when handling this chemical reagent. As a CK1 inhibitor, the compound may have effects on circadian rhythm and cellular processes. Standard toxicity studies in rodents would be required to determine the safety profile if therapeutic development is pursued.
References

[1]. Substituted benzothiazoles and therapeutic uses thereof for the treatment of human diseases. WO2014114825A1.

[2]. Protein kinase CK-1 inhibitors as new potential drugs for amyotrophic lateral sclerosis. J Med Chem. 2014 Mar 27;57(6):2755-72.

Additional Infomation
CK1-IN-3 is a research-grade compound supplied for circadian rhythm and inflammation research. It is not an approved pharmaceutical and has no clinical trial history. The compound is a potent CK1 inhibitor with an IC50 of 2.22 µM for CK-1δ. It has been shown to extend lifespan in Drosophila. This product is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H16N2O3S
Molecular Weight
328.386
Exact Mass
328.088
CAS #
349438-74-0
PubChem CID
670752
Appearance
Gray to brown solid powder
LogP
3.4
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
5
Heavy Atom Count
23
Complexity
409
Defined Atom Stereocenter Count
0
SMILES
COC1C=CC2N=C(SC=2C=1)NC(CC1=CC=CC=C1OC)=O
InChi Key
HFBLBLSJZDGKCC-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H16N2O3S/c1-21-12-7-8-13-15(10-12)23-17(18-13)19-16(20)9-11-5-3-4-6-14(11)22-2/h3-8,10H,9H2,1-2H3,(H,18,19,20)
Chemical Name
N-(6-methoxy-1,3-benzothiazol-2-yl)-2-(2-methoxyphenyl)acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0452 mL 15.2258 mL 30.4516 mL
5 mM 0.6090 mL 3.0452 mL 6.0903 mL
10 mM 0.3045 mL 1.5226 mL 3.0452 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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