yingweiwo

X-GalNAc

Cat No.:V44544 Purity: ≥98%
X-GalNAc, chromogenic substrate for N-acetyl-β-galactosidase
X-GalNAc
X-GalNAc Chemical Structure CAS No.: 129572-48-1
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
250mg
500mg
Other Sizes
Official Supplier of:
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text
Alternate Text

 

  • Business Relationship with 5000+ Clients Globally
  • Major Universities, Research Institutions, Biotech & Pharma
  • Citations by Top Journals: Nature, Cell, Science, etc.
Top Publications Citing lnvivochem Products
Product Description
X-GalNAc is a chromogenic substrate for for N-acetyl-β-galactosidase, and may used to determine the presence or absence of a cloned DNA insert in bacteria growing on agar plates.
X-GalNAc (5-Bromo-4-chloro-3-indolyl N-acetyl-β-D-galactosaminide) is a chromogenic substrate used to detect N-acetyl-β-galactosidase activity. It is a synthetic compound consisting of a galactosamine (GalNAc) sugar linked to a chromogenic indolyl group. Upon enzymatic hydrolysis, X-GalNAc releases a colored precipitate. It is widely used in glycosylation studies and enzymatic assays. Its molecular formula is C16H18BrClN2O6 and its molecular weight is 449.68.
Biological Activity I Assay Protocols (From Reference)
Targets
X-GalNAc targets the enzyme N-acetyl-β-galactosidase, which catalyzes the hydrolysis of terminal N-acetylgalactosamine residues from glycoconjugates. As a chromogenic substrate, it is not a drug targeting a receptor but rather a tool for detecting enzyme activity. The compound is hydrolyzed by the enzyme, releasing a chromophore that produces a colored precipitate, indicating the presence of enzymatic activity.
ln Vitro
In vitro, X-GalNAc is used as a chromogenic substrate in enzymatic assays to detect N-acetyl-β-galactosidase activity. It is particularly useful for determining the presence or absence of a cloned DNA insert in bacteria growing on agar plates, as part of blue-white screening. Upon enzymatic cleavage, it produces a colored precipitate that is easily visualized.
ln Vivo
In vivo applications of X-GalNAc are not typical, as it is primarily used in vitro for enzymatic assays and bacterial screening. It is not administered to living animals for therapeutic or diagnostic purposes. Its use is confined to laboratory research settings.
Enzyme Assay
A cell-free assay for X-GalNAc involves incubating the substrate with a sample containing N-acetyl-β-galactosidase enzyme. The enzymatic hydrolysis of X-GalNAc releases the chromogenic indoxyl group, which then dimerizes to form an insoluble blue precipitate. The intensity of the color can be measured to quantify enzyme activity. This is a standard assay for detecting glycosidase activity.
Cell Assay
Cellular or bacterial experiments with X-GalNAc typically involve growing bacteria on agar plates containing the substrate. Bacterial colonies that express N-acetyl-β-galactosidase will hydrolyze X-GalNAc, producing a blue color. This is a classic method for blue-white screening of recombinant clones. Specific protocols depend on the bacterial strain and plasmid used.
Animal Protocol
In vivo animal experiments for X-GalNAc are not applicable, as it is a staining reagent used in vitro on bacterial plates or tissue sections.
ADME/Pharmacokinetics
X-GalNAc is a small molecule substrate with a molecular weight of 449.68. Its pharmacokinetic properties are not relevant as it is not a therapeutic drug. The compound is used in vitro for research applications. It should be stored under appropriate conditions to maintain its stability.
Toxicity/Toxicokinetics
Toxicity data for X-GalNAc are not provided in the available sources. As a chromogenic substrate, it is generally considered to have low toxicity for its intended research applications. However, specific toxicological information is not available. The compound is intended for research use only and not for human consumption.
References

[1]. Applying neutral drift to the directed molecular evolution of a β-glucuronidase into a β-galactosidase: Two different evolutionary pathways lead to the same variant. BMC Res Notes. 2011 May 6;4:138.

[2]. N-acetylgalactosamine utilization pathway and regulon in proteobacteria: genomic reconstruction and experimental characterization in Shewanella. J Biol Chem. 2012 Aug 10;287(33):28047-56.

Additional Infomation
X-GalNAc (CAS: 129572-48-1) is a chromogenic substrate for N-acetyl-β-galactosidase. It is also known as 5-Bromo-4-chloro-3-indolyl N-acetyl-β-D-galactosaminide. The compound is used in glycosylation studies and enzymatic assays, and is particularly useful for blue-white screening of bacterial clones. Upon enzymatic hydrolysis, it releases a colored precipitate. Its molecular formula is C16H18BrClN2O6 and its molecular weight is 449.68.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H18BRCLN2O6
Molecular Weight
449.68
Exact Mass
448.003
CAS #
129572-48-1
PubChem CID
9955373
Appearance
White to off-white solid powder
Density
1.8±0.1 g/cm3
Boiling Point
777.5±60.0 °C at 760 mmHg
Melting Point
220ºC(lit.)
Flash Point
424.0±32.9 °C
Vapour Pressure
0.0±2.8 mmHg at 25°C
Index of Refraction
1.702
LogP
1.39
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
4
Heavy Atom Count
26
Complexity
517
Defined Atom Stereocenter Count
5
SMILES
CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1OC2=CNC3=C2C(=C(C=C3)Br)Cl)CO)O)O
InChi Key
SUWPNTKTZYIFQT-LMXXTMHSSA-N
InChi Code
InChI=1S/C16H18BrClN2O6/c1-6(22)20-13-15(24)14(23)10(5-21)26-16(13)25-9-4-19-8-3-2-7(17)12(18)11(8)9/h2-4,10,13-16,19,21,23-24H,5H2,1H3,(H,20,22)/t10-,13-,14+,15-,16-/m1/s1
Chemical Name
N-[(2S,3R,4R,5R,6R)-2-[(5-bromo-4-chloro-1H-indol-3-yl)oxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~555.95 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
View More

Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
View More

Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2238 mL 11.1190 mL 22.2380 mL
5 mM 0.4448 mL 2.2238 mL 4.4476 mL
10 mM 0.2224 mL 1.1119 mL 2.2238 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
+
+
+

Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Contact Us