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X-alpha-Gal

Cat No.:V28245 Purity: ≥98%
X-alpha-Gal is a novel and potent substrate for alpha-galactosidase
X-alpha-Gal
X-alpha-Gal Chemical Structure CAS No.: 107021-38-5
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
X-alpha-Gal is a novel and potent substrate for alpha-galactosidase
X-alpha-Gal (5-Bromo-4-chloro-3-indolyl α-D-galactopyranoside) is a chromogenic substrate used for the detection of α-galactosidase activity. It is a synthetic glycoside that consists of an α-D-galactopyranoside moiety linked to a bromo-chloro-indoxyl group. Upon cleavage by α-galactosidase, the indoxyl group is released and oxidizes to form an insoluble blue precipitate, allowing for the identification of α-galactosidase-positive colonies. X-alpha-Gal is widely used in yeast genetics and molecular biology for blue-white screening.
Biological Activity I Assay Protocols (From Reference)
Targets
X-alpha-Gal is a substrate for α-galactosidase, an enzyme that catalyzes the hydrolysis of α-galactosides. It is also a substrate for β-galactopyranoside. The compound is specifically cleaved by α-galactosidase, releasing 5-bromo-4-chloro-3-hydroxyindole, which then dimerizes and oxidizes to form an insoluble blue pigment. This allows for the detection of α-galactosidase activity in biological samples.
ln Vitro
X-alpha-Gal is a chromogenic substrate for α-galactosidase. It is used to distinguish α-galactosidase-positive yeast strains from negative ones. The compound is also used in yeast two-hybrid assays for the GAL4 system, enabling the direct detection of positive blue colonies on culture media without the need for time-consuming β-galactosidase reporter gene assays.
ln Vivo
Specific in vivo activity data for X-alpha-Gal are not applicable as it is a reagent used in in vitro assays. The compound is not a drug and is not intended for in vivo use. It is used exclusively as a laboratory reagent for the detection of α-galactosidase activity.
Enzyme Assay
The in vitro assay for X-alpha-Gal typically involves incorporating the substrate into agar plates or using it in a liquid assay. For colony screening, X-alpha-Gal is added to the growth medium at a concentration of 40-100 μg/mL. α-Galactosidase-positive colonies turn blue, while negative colonies remain white. For quantitative assays, the release of the chromophore can be measured spectrophotometrically at a specific wavelength.
Cell Assay
The in vitro cellular assay for X-alpha-Gal typically involves culturing yeast or bacterial cells that express α-galactosidase on agar plates containing the substrate. The cells are grown overnight at the appropriate temperature, and the appearance of blue colonies indicates α-galactosidase activity. This assay is widely used for screening libraries of mutants or for identifying clones that express the enzyme.
Animal Protocol
In vivo animal studies are not applicable for X-alpha-Gal, as it is a reagent used in vitro. The compound is not a drug and is not intended for use in animals.
ADME/Pharmacokinetics
X-alpha-Gal has a molecular weight of 408.63 g/mol and a molecular formula of C14H15BrClNO6. The IUPAC name is (2R,3R,4S,5R,6R)-2-[(5-bromo-4-chloro-1H-indol-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol. It has a melting point of 230°C (dec.). The compound should be stored at 4°C or below. It is also known as X-α-Gal.
Toxicity/Toxicokinetics
Specific toxicology data for X-alpha-Gal are not available in the public domain. The compound is intended for research use only and should be handled with appropriate laboratory safety precautions. Standard safety assessments would be required before any clinical application. Researchers should consult the safety data sheet for detailed handling and disposal information.
Additional Infomation
5-Bromo-4-chloro-3-indolyl α-D-galactoside is an indolyl sugar, an α-D-galactoside of indophenol, wherein the indole moiety is substituted with chlorine at the 4-position and bromine at the 5-position. It is an organobromine compound, an organochlorine compound, an indolyl sugar, a D-aldose derivative, and an α-D-galactoside. Functionally, it is related to indophenol.
X-alpha-Gal (5-Bromo-4-chloro-3-indolyl α-D-galactopyranoside) is a chromogenic substrate used for the detection of α-galactosidase activity. It is used in yeast genetics and molecular biology for blue-white screening. The compound is cleaved by α-galactosidase to release an indoxyl group that oxidizes to form an insoluble blue precipitate. It is not a drug and has no therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C14H15NO6CLBR
Molecular Weight
408.629
Exact Mass
406.977
CAS #
107021-38-5
PubChem CID
10173103
Appearance
White to light yellow solid powder
Density
1.882g/cm3
Boiling Point
673.9ºC at 760mmHg
Flash Point
361.3ºC
Vapour Pressure
4.44E-19mmHg at 25°C
Index of Refraction
1.731
LogP
0.762
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
3
Heavy Atom Count
23
Complexity
421
Defined Atom Stereocenter Count
5
SMILES
O[C@H]([C@H]([C@H]([C@@H](CO)O1)O)O)[C@H]1OC2=CNC3=C2C(Cl)=C(Br)C=C3
InChi Key
OPIFSICVWOWJMJ-YGEXGZRRSA-N
InChi Code
InChI=1S/C14H15BrClNO6/c15-5-1-2-6-9(10(5)16)7(3-17-6)22-14-13(21)12(20)11(19)8(4-18)23-14/h1-3,8,11-14,17-21H,4H2/t8-,11+,12+,13-,14+/m1/s1
Chemical Name
(2R,3R,4S,5R,6R)-2-[(5-bromo-4-chloro-1H-indol-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4472 mL 12.2360 mL 24.4720 mL
5 mM 0.4894 mL 2.4472 mL 4.8944 mL
10 mM 0.2447 mL 1.2236 mL 2.4472 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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