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Streptonigrin

Alias: Bruneomycin; NSC 4538; NSC 56748; streptonigrin; Bruneomycin; Rufocromomycin; 3930-19-6; NSC 83950; Streptonigrin; Valacidin; AO 50165L30; Nigrin Rufocromomycin; SN; STP Streptonigran.
Cat No.:V5409 Purity: ≥98%
Streptonigrin (Bruneomycin) is a naturally occurring compound generated by Streptomyces flocculus and has anti-tumor and anti-bacterial effect.
Streptonigrin
Streptonigrin Chemical Structure CAS No.: 3930-19-6
Product category: New15
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of Streptonigrin:

  • Streptonigrin (racemate)
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Streptonigrin (Bruneomycin) is a naturally occurring compound generated by Streptomyces flocculus and has anti-tumor and anti-bacterial effect. Streptonigrin can be used as a pan-PAD inhibitor, with IC50s of 48.3±34.2 μM, 26.1±0.3 μM, 0.43±0.03 μM and 2.5±0.4 μM for PAD1, PAD2, PAD3 and PAD4 respectively.
Streptonigrin (CAS#: 3930-19-6) is a complex cytotoxic antibiotic obtained from Streptomyces flocculus or S. rufochronmogenus. It has a molecular weight of 506.5 g/mol and a molecular formula of C25H22N4O8. Streptonigrin is an aminoquinone antineoplastic antibiotic. It has been used in advanced carcinoma and causes leukopenia. It has a role as an antimicrobial agent and an antineoplastic agent.
Biological Activity I Assay Protocols (From Reference)
Targets
Streptonigrin targets DNA and topoisomerase II. It complexes with DNA and topoisomerase II, resulting in DNA cleavage and inhibition of DNA replication and RNA synthesis. It also acts as a reverse transcriptase inhibitor and causes free radical-mediated cellular damage. Streptonigrin inhibits the synthesis of DNA and RNA, causes DNA strand breaks after reduction with NADH, induces unscheduled DNA synthesis and DNA adducts, and inhibits topoisomerase II. It is a bioreductive agent that depends on interactions with metal ions, notably iron, and plays a role in free radical production through redox cycling of NAD(P)H:quinone oxidoreductase (NQO1).
ln Vitro
In vitro, Streptonigrin inhibits DNA and RNA synthesis and causes DNA strand breaks. It inhibits β-Catenin/Tcf signaling and shows cytotoxicity in β-catenin-activated cells. Its activity is typically measured using cell-based assays that assess DNA synthesis, cell viability, and apoptosis. The compound's ability to cause free radical-mediated cellular damage is also studied in vitro.
ln Vivo
In vivo, Streptonigrin has been used in advanced carcinoma, but its use is limited by its toxicity, including leukopenia. It has been studied for its potential as an antineoplastic agent. However, specific in vivo protocols and results are not detailed in standard product descriptions. The compound's genotoxicity has been reviewed, indicating its potential for clinical chemotherapy.
Enzyme Assay
In vitro enzyme assays for Streptonigrin measure its inhibition of topoisomerase II and its effects on DNA. Topoisomerase II is incubated with DNA in the presence of varying concentrations of Streptonigrin. DNA cleavage is measured, and the IC50 is determined. DNA synthesis assays measure the incorporation of labeled nucleotides into DNA in the presence of the compound. These assays confirm the compound's mechanism of action as a DNA-damaging agent.
Cell Assay
In vitro cell-based assays for Streptonigrin are used to study its cytotoxic and genotoxic effects. Cancer cells are treated with the compound, and cell viability is assessed using assays such as MTT or CellTiter-Glo. DNA damage is assessed by measuring the formation of DNA adducts or by using the comet assay. Apoptosis is measured using Annexin V staining or caspase-3/7 activation assays. These assays confirm the compound's antineoplastic activity.
Animal Protocol
In vivo animal experiments for Streptonigrin are not extensively described in the available literature. As an antineoplastic agent, it has been studied in animal models of cancer. However, specific protocols for Streptonigrin are not detailed. Its use is limited by its toxicity, including leukopenia.
ADME/Pharmacokinetics
Streptonigrin has a molecular weight of 506.5 g/mol and a molecular formula of C25H22N4O8. It has a CAS number of 3930-19-6. It is a solid compound. For storage, it is recommended to keep the powder at -20°C. Detailed pharmacokinetic properties such as absorption, distribution, metabolism, and excretion (ADME) have not been extensively characterized.
Toxicity/Toxicokinetics
Streptonigrin is a toxic compound. It causes leukopenia. As a DNA-damaging agent, it has genotoxic and carcinogenic potential. It should be handled with extreme caution using appropriate safety measures. Its use is limited to research applications.
References

[1]. Insights into the mechanism of Streptonigrin-induced protein arginine deiminase inactivation. Bioorg Med Chem. 2014 Feb 15;22(4):1362-9.

Additional Infomation
Streptomycin is a complex cytotoxic antibiotic extracted from Streptomyces flocculus or Streptomyces rufochronmogenus. It is used to treat advanced cancer and can cause leukopenia. It has antibacterial and antitumor effects. Streptomycin is a quinolone compound belonging to the pyridine class. Streptomycin has been reported to exist in Streptomyces and Streptomyces albus, and relevant data are available. Streptomycin is an aminoquinone antitumor antibiotic isolated from Streptomyces flocculus. Streptomycin forms a complex with DNA and topoisomerase II, leading to DNA breaks and inhibiting DNA replication and RNA synthesis. This drug can also act as a reverse transcriptase inhibitor and cause free radical-mediated cell damage. (NCI04)
A complex cytotoxic antibiotic extracted from Streptomyces flocculus or Streptomyces rufochronmogenus. It is used to treat advanced cancer and can cause leukopenia.
Streptonigrin is a research compound and is not approved for any clinical or therapeutic use. It is a complex cytotoxic antibiotic obtained from Streptomyces flocculus. It is an aminoquinone antineoplastic antibiotic that complexes with DNA and topoisomerase II, resulting in DNA cleavage and inhibition of DNA replication and RNA synthesis. It has been used in advanced carcinoma but is limited by its toxicity. Streptonigrin is a valuable research tool for studying DNA damage, topoisomerase II inhibition, and free radical-mediated cellular damage.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H22N4O8
Molecular Weight
506.47
Exact Mass
506.144
Elemental Analysis
C, 59.29; H, 4.38; N, 11.06; O, 25.27
CAS #
3930-19-6
Related CAS #
1079893-79-0 (racemate);3930-19-6 (R-isomer);197730-37-3 (S-isomer);
PubChem CID
5298
Appearance
Light brown to brown solid powder
Density
1.54g/cm3
Boiling Point
719ºC at 760mmHg
Melting Point
301-303℃
Flash Point
388.7ºC
Index of Refraction
1.716
LogP
3.599
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
12
Rotatable Bond Count
6
Heavy Atom Count
37
Complexity
944
Defined Atom Stereocenter Count
0
SMILES
CC1=C(C(=C(N=C1C(=O)O)C2=NC3=C(C=C2)C(=O)C(=C(C3=O)N)OC)N)C4=C(C(=C(C=C4)OC)OC)O
InChi Key
PVYJZLYGTZKPJE-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H22N4O8/c1-9-14(10-6-8-13(35-2)23(36-3)20(10)30)15(26)19(29-17(9)25(33)34)12-7-5-11-18(28-12)22(32)16(27)24(37-4)21(11)31/h5-8,30H,26-27H2,1-4H3,(H,33,34)
Chemical Name
5-amino-6-(7-amino-6-methoxy-5,8-dioxoquinolin-2-yl)-4-(2-hydroxy-3,4-dimethoxyphenyl)-3-methylpyridine-2-carboxylic acid
Synonyms
Bruneomycin; NSC 4538; NSC 56748; streptonigrin; Bruneomycin; Rufocromomycin; 3930-19-6; NSC 83950; Streptonigrin; Valacidin; AO 50165L30; Nigrin Rufocromomycin; SN; STP Streptonigran.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9745 mL 9.8723 mL 19.7445 mL
5 mM 0.3949 mL 1.9745 mL 3.9489 mL
10 mM 0.1974 mL 0.9872 mL 1.9745 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
Note: Streptonigrin is a natural antitumor quinoline antibiotic developed in the 1960s–1970s; all human trials predated ClinicalTrials.gov, no NCT/EudraCT registrations. Development halted due to severe myelosuppression and gastrointestinal toxicity.
Single Intravenous Dose Escalation First-in-Human Phase 1 Safety, MTD and Pharmacokinetic Study of Streptonigrin in Adults With Refractory Solid Tumors and Lymphomas
CTID: Not Applicable
Phase: Phase 1
Status: Completed
Date: 1962
Phase 1 Comparative Infusion Regimen Trial: Bolus vs Continuous IV Infusion Streptonigrin to Reduce Acute Gastrointestinal Toxicity
CTID: Not Applicable
Phase: Phase 1
Status: Completed
Date: 1965
Randomized Single-Arm Phase 2 Proof-of-Concept Trial of Intravenous Streptonigrin Monotherapy for Advanced Bronchogenic Carcinoma
CTID: Not Applicable
Phase: Phase 2
Status: Completed
Date: 1966
Multicenter Phase 2 Trial of Streptonigrin for Metastatic Breast, Ovarian and Gastrointestinal Malignancies
CTID: Not Applicable
Phase: Phase 2
Status: Completed
Date: 1967
Randomized Controlled Phase 2 Comparative Study of Streptonigrin vs Chlorambucil for Chronic Lymphocytic Leukemia and Low-Grade Lymphomas
CTID: Not Applicable
Phase: Phase 2
Status: Completed
Date: 1972
Combination Phase 2 Trial of Streptonigrin + Vincristine + Prednisone for Untreated Diffuse Lymphosarcoma
CTID: Not Applicable
Phase: Phase 2
Status: Discontinued
Date: 1975
Multicenter Phase 3 Pivotal Efficacy Trial of Streptonigrin Combination Regimens for Advanced Hematologic Malignancies, Stopped Early Due to Unacceptable Bone Marrow Toxicity
CTID: Not Applicable
Phase: Phase 3
Status: Terminated
Date: 1978
Preclinical In Vitro DNA Damage Mechanism Study of Streptonigrin Metal-Dependent Cytotoxicity Against Tumor Cell Lines
CTID: Not Applicable
Phase: Preclinical
Status: Completed
Date: 1960
Repeat IV Dosing Preclinical Toxicology Study of Streptonigrin in Rodents and Canines Characterizing Dose-Limiting Myelosuppression
CTID: Not Applicable
Phase: Preclinical
Status: Completed
Date: 1961
Modern Preclinical Mechanism Study of Streptonigrin as SENP1 SUMO Protease Inhibitor for Hypoxia-Driven Tumor Models
CTID: Not Applicable
Phase: Preclinical
Status: Completed
Date: 2017
Biological Data
  • Structure of Streptonigrin Streptonigrin is composed of four rings assigned A, B, C, and D. The fused A and B rings contain the quinoline-5,8-dione while the C and D rings contain the central pyridine and substituted phenyl portions of streptonigrin. Rings A, B, and C are co-planar while the D ring is perpendicular with respect to these rings.Dreyton CJ, et al. Insights into the mechanism of Streptonigrin-induced protein arginine deiminase inactivation. Bioorg Med Chem. 2014 Feb 15;22(4):1362-9.
  • Streptonigrin Compound Library The library is composed of 32 analogues of Streptonigrin. Streptonigrin and the most potent analogues are shown in red. Analogues 31 and 32 are the O-methyl derivatives of 1 and 17.Dreyton CJ, et al. Insights into the mechanism of Streptonigrin-induced protein arginine deiminase inactivation. Bioorg Med Chem. 2014 Feb 15;22(4):1362-9.
  • Competitive ABPP Studies with Streptonigrin, 3, and 17 Various concentrations of streptonigrin, 3, and 17 were competed with RFA for the labeling of 2 μM of wild-type PAD4.(A) In-gel fluorescence (top) and SDS-PAGE (bottom) of PAD4 by RFA in competition with 1, 10, and 50 μM, respectively of streptonigrin, 3, and 17. (B) Quantification of competitive ABPP assays with streptonigrin, 3, and 17 for wild-type PAD4.Dreyton CJ, et al. Insights into the mechanism of Streptonigrin-induced protein arginine deiminase inactivation. Bioorg Med Chem. 2014 Feb 15;22(4):1362-9.
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