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Sofosbuvir impurity M

Cat No.:V31750 Purity: ≥98%
Sofosbuvir impurity M is an impurity and diastereoisomer of Sofosbuvir (PSI7977; GS7977; sovaldi; virunon) which is an HCV NS5B polymerase inhibitor and an blockbuster drug approved for the treatment of chronic hepatitis C virus (HCV) infection.
Sofosbuvir impurity M
Sofosbuvir impurity M Chemical Structure CAS No.: 2095551-10-1
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes
Official Supplier of:
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Product Description
Sofosbuvir impurity M is an impurity and diastereoisomer of Sofosbuvir (PSI7977; GS7977; sovaldi; virunon) which is an HCV NS5B polymerase inhibitor and an blockbuster drug approved for the treatment of chronic hepatitis C virus (HCV) infection.


Sofosbuvir impurity M is a diastereoisomer and impurity of Sofosbuvir (also known as PSI-7977 or GS-7977), a blockbuster drug approved for the treatment of chronic hepatitis C virus (HCV) infection. With a molecular formula of C22H30N3O10P and a molecular weight of 527.46-527.467 g/mol, it is a critical reference standard used in the analysis and quality control of Sofosbuvir. Sofosbuvir is an HCV NS5B polymerase inhibitor that demonstrates potent anti-hepatitis C virus activity. Sofosbuvir impurity M provides insight into how structural deviations affect activity.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of Sofosbuvir impurity M, as an impurity of Sofosbuvir, is the HCV NS5B polymerase, an enzyme essential for hepatitis C virus RNA replication. Sofosbuvir acts as a nucleotide analog inhibitor that terminates viral RNA chain elongation. As a diastereoisomer of Sofosbuvir, Sofosbuvir impurity M is a structural variant that serves as a reference standard for analytical purposes rather than a therapeutic agent. Its presence in Sofosbuvir batches is monitored to ensure the quality and purity of the active pharmaceutical ingredient. The compound provides insight into how structural deviations affect antiviral activity.
ln Vitro
In vitro studies of Sofosbuvir impurity M are primarily focused on its use as an analytical reference standard rather than its biological activity. As a diastereoisomer of Sofosbuvir, which is a potent HCV NS5B polymerase inhibitor, the impurity may have different biological activity compared to the parent compound. The compound is used in analytical method development and quality control to ensure the purity and potency of Sofosbuvir drug products. Its presence and concentration are monitored using HPLC or other analytical techniques. Sofosbuvir impurity M provides insight into how structural deviations affect activity.
ln Vivo
In vivo studies of Sofosbuvir impurity M are not typically performed, as it is used as an analytical reference standard rather than a therapeutic agent. As an impurity and diastereoisomer of Sofosbuvir, it is not intended for administration to animals or humans. The compound's primary application is in quality control and analytical method development for the antiviral drug Sofosbuvir. Its presence in Sofosbuvir batches is regulated to ensure the safety and efficacy of the drug product. The compound provides insight into how structural deviations affect activity.
Enzyme Assay
For in vitro enzyme/receptor binding assays, Sofosbuvir impurity M is not typically used in biological activity assays, as it is primarily an analytical reference standard. However, the compound could be evaluated in HCV NS5B polymerase assays to compare its activity with that of Sofosbuvir. These assays involve incubating the compound with recombinant NS5B polymerase, RNA template, and nucleotides. Polymerase activity is quantified by measuring RNA synthesis. IC₅0 values can be determined from dose-response curves. The compound's ability to inhibit HCV replication can also be assessed in cell-based HCV replicon assays. Such studies would provide insight into how structural deviations affect activity.
Cell Assay
For in vitro cellular experiments, Sofosbuvir impurity M is not typically used in cell-based assays, as it is primarily an analytical reference standard. However, the compound could be tested in HCV replicon cell lines to evaluate its antiviral activity compared to Sofosbuvir. Cells are cultured in appropriate media and treated with various concentrations of the compound. HCV RNA replication is measured by qPCR or other detection methods. Cell viability is monitored to assess cytotoxicity. Such studies would provide insight into how structural deviations affect antiviral activity and help understand the structure-activity relationships of Sofosbuvir analogs.
Animal Protocol
For in vivo animal experiments, Sofosbuvir impurity M is not typically administered to animals, as it is used as an analytical reference standard rather than a therapeutic agent. However, the compound could be studied in animal models to evaluate its pharmacokinetic properties and potential toxicity if it were to be present as an impurity in Sofosbuvir formulations. Such studies would help understand the safety profile of Sofosbuvir impurities. The compound provides insight into how structural deviations affect activity. Animal studies would follow appropriate ethical guidelines.
ADME/Pharmacokinetics
Pharmacokinetic properties of Sofosbuvir impurity M are not characterized, as it is used as an analytical reference standard rather than a therapeutic agent. As a diastereoisomer of Sofosbuvir, its pharmacokinetic properties would likely be similar to those of Sofosbuvir, but differences due to stereochemistry could affect its absorption, distribution, metabolism, and excretion. Sofosbuvir is a nucleotide analog prodrug with good oral bioavailability. The compound provides insight into how structural deviations affect activity. Further pharmacokinetic studies would be needed to fully characterize its profile.
Toxicity/Toxicokinetics
Toxicological data for Sofosbuvir impurity M are limited, as it is used as an analytical reference standard rather than a therapeutic agent. As an impurity of Sofosbuvir, its toxicity would be relevant for the safety of Sofosbuvir drug products. Impurities in pharmaceutical products are regulated to ensure they are present at safe levels. The compound provides insight into how structural deviations affect activity. Standard toxicological assessments would include cytotoxicity screening in relevant cell lines and genotoxicity testing. As with all research chemicals, appropriate safety precautions should be taken when handling Sofosbuvir impurity M.
Additional Infomation
Sofosbuvir impurity M is a research compound used as an analytical reference standard for Sofosbuvir quality control. No clinical trials or regulatory approvals have been reported for this specific impurity as a therapeutic agent. It is available from various chemical suppliers for research purposes only. The compound is a diastereoisomer and impurity of Sofosbuvir, an HCV NS5B polymerase inhibitor and blockbuster drug approved for chronic hepatitis C. It provides insight into how structural deviations affect activity and is used in analog structure-activity studies.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H30N3O10P
Molecular Weight
527.461467266083
Exact Mass
527.166
CAS #
2095551-10-1
PubChem CID
130337055
Appearance
Light yellow to yellow solid powder
LogP
0
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
11
Heavy Atom Count
36
Complexity
909
Defined Atom Stereocenter Count
5
SMILES
O=[P@@](N[C@@H](C)C(OC(C)C)=O)(OC[C@@H]1[C@@H](O)[C@@](O)(C)[C@H](N2C=CC(NC2=O)=O)O1)OC3=CC=CC=C3
InChi Key
WAKQLZVLNOKKHE-YMGVOGLASA-N
InChi Code
InChI=1S/C22H30N3O10P/c1-13(2)33-19(28)14(3)24-36(31,35-15-8-6-5-7-9-15)32-12-16-18(27)22(4,30)20(34-16)25-11-10-17(26)23-21(25)29/h5-11,13-14,16,18,20,27,30H,12H2,1-4H3,(H,24,31)(H,23,26,29)/t14-,16+,18+,20+,22-,36?/m0/s1
Chemical Name
propan-2-yl (2S)-2-[[[(2R,3R,4S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-4-methyloxolan-2-yl]methoxy-phenoxyphosphoryl]amino]propanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8959 mL 9.4794 mL 18.9588 mL
5 mM 0.3792 mL 1.8959 mL 3.7918 mL
10 mM 0.1896 mL 0.9479 mL 1.8959 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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