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Simmiparib

Cat No.:V42421 Purity: ≥98%
Simmiparib is a novel and potent dual PARP1 and PARP2 inhibitor (IC50 = 1.75/0.22 nM) with anticancer activity.
Simmiparib
Simmiparib Chemical Structure CAS No.: 1551355-46-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

Simmiparib is a novel and potent dual PARP1 and PARP2 inhibitor (IC50 = 1.75/0.22 nM) with anticancer activity. It selectively inhibits PARP1 with >90-fold higher potency than the other PARPs (PARP3, TNKS1, TNKS2).

Biological Activity I Assay Protocols (From Reference)
ln Vitro
Simmiparib has antiproliferative action against a range of cancer cells at concentrations of 0–10 μM for three days [1]. In Capan-1 cells, simmaparib (0–10 μM; 48 hours) causes a classic G2/M arrest [1]. Simmiparib (0.1-2 μM; 24 hours) dose-dependently raises γH2AX levels and causes apoptosis in MDA-MB-436 and V-C8 (BRCA2-/-) cells [1]. Simmiparib (1-10 μM; 48 hours or 72 hours) raises the levels of protein for p-Cyclin B1 (S147), Cyclin B1, p-CDK1 (Y15), and CDK1 as well as the phosphorylation of Chk1 and Chk2[1].
ln Vivo
Simmiparib inhibits the growth of tumors in BRCA2-/- and MDA-MB-436 (BRCA2-/-) xenograft mouse models. It is administered orally once daily for 14 days at doses of 2, 4, and 8 mg/kg. 1]. In a xenograft mouse model, simpliparib (10 and 50 mg/kg; oral; once daily for 42 days) inhibits the growth of BRCA1-mutated breast cancer [1].
Cell Assay
Cell Proliferation Assay[1]
Cell Types: Various cancer cells containing defects in BRCA1, BRCA2, PTEN and EWS-FLI1
Tested Concentrations: 0-10 μM
Incubation Duration: 3 days
Experimental Results: For MDA-MB-436 (BRCA1-/-) , RD-ES (EWS-FLI1), DoTc2-4510 (BRCA2-/-), Capan-1 (BRCA2-/-) and U251 (PTEN-/-), with IC50 of 0.2 nM, 4.6 nM and 20 respectively. nM, 21 nM and 36 nM.

Cell cycle analysis[1]
Cell Types: Capan-1 Cell
Tested Concentrations: 0, 1, 3 and 10 μM
Incubation Duration: 48 hrs (hours)
Experimental Results: Induction of typical G2/M arrest in a concentration-dependent manner.

Apoptosis analysis [1]
Cell Types: MDA-MB-436
Tested Concentrations: 0.1 and 1 μM
Incubation Duration: 24 hrs (hours)
Experimental Results: 0.1 and 1 μM caused 39.64% and 42.98% of cell apoptosis respectively. γH2AX levels increased in a dose-dependent manner.

Apoptosis analysis[1]
Cell Types: V-C8 (BRCA2-/-)
Tested Concentrations: 0.5 and 2 μM
Incubation Duration: 24 hrs (hours)
Experimental Results: Caused more than 57% of cells to undergo apoptosis.

Western Blot Analysis[1]
Cell Types: Capan-1
Tested Concentrations: 1 and 10 μM I
Animal Protocol
Animal/Disease Models: Female BALB/cA nude mice (subcutaneous injection of BRCA2-/- V-C8 cells and BRCA2-/- MDA-MB-436 cells) [1]
Doses: 2, 4 and 8 mg/kg
Route of Administration: po ; qd, 14 days
Experimental Results: 8 mg/kg Dramatically inhibited V-C8 tumor growth, with an inhibition rate of 74.53%. Inhibited the growth of BRCA1-deficient MDA-MB-436 xenografts in a dose-dependent manner, with average inhibition rates of 64.93, 82.98, and 85.79% at 2, 4, and 8 mg/kg. Did not result in significant weight loss.

Animal/Disease Models: Female BALB/cA nude mice (subcutaneous injection of BRCA1 mutated BR-05-0028 breast cancer tissue-derived cancer cells) [1]
Doses: 10 and 50 mg/kg
Route of Administration: po; qd, for 42 days
Experimental Results: Produce dose-dependent growth inhibition, the inhibition rates at 10 mg/kg and 50 mg/kg were 76.73% and 93.82% respectively.
References

[1]. Poly(ADP-ribose)polymerase (PARP) inhibition and anticancer activity of simmiparib, a new inhibitor undergoing clinical trials. Cancer Lett. 2017 Feb 1;386:47-56.

Additional Infomation
Simmiparib is an orally bioavailable inhibitor of the nuclear enzyme poly(ADP-ribose) polymerase (PARP) 1 (PARP1) and 2 (PARP2), with potential antineoplastic activity. Upon oral administration, simmiparib selectively binds to PARP and prevents PARP-mediated DNA repair of breaks in single-stranded DNA via the base excision repair pathway. This induces the accumulation of DNA strand breaks, promotes genomic instability, induces G2/M arrest and leads to apoptosis. PARP is activated by single-strand DNA breaks and catalyzes post-translational ADP-ribosylation of nuclear proteins, which signal and recruit other proteins to repair damaged DNA.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C24H20F4N6O
Molecular Weight
484.448818206787
Exact Mass
486.142
CAS #
1551355-46-4
PubChem CID
72736758
Appearance
White to off-white solid powder
LogP
2.2
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
3
Heavy Atom Count
35
Complexity
869
Defined Atom Stereocenter Count
0
SMILES
C1(C)N2C(=NN=C2CN(C(C2C(=CC=C(C=2)CC2C3C(C(NN=2)=O)=CC=CC=3)F)=C)C1)C(F)(F)F
InChi Key
QNQFPYADHVFRKQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H18F4N6O2/c1-12-10-32(11-19-29-31-22(33(12)19)23(25,26)27)21(35)16-8-13(6-7-17(16)24)9-18-14-4-2-3-5-15(14)20(34)30-28-18/h2-8,12H,9-11H2,1H3,(H,30,34)
Chemical Name
4-[[4-fluoro-3-[5-methyl-3-(trifluoromethyl)-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazine-7-carbonyl]phenyl]methyl]-2H-phthalazin-1-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~205.58 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0642 mL 10.3210 mL 20.6420 mL
5 mM 0.4128 mL 2.0642 mL 4.1284 mL
10 mM 0.2064 mL 1.0321 mL 2.0642 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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