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Senexin B

Cat No.:V14636 Purity: ≥98%
Senexin B is a novel, potent,orallybioavailableand selective CDK8/19 inhibitor.
Senexin B
Senexin B Chemical Structure CAS No.: 1449228-40-3
Product category: New12
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
Senexin B is a novel, potent, orally bioavailable and selective CDK8/19 inhibitor. Senexin B inhibits CDK8/19 in low nanomolar range in vitro and in vivo as an ATP pocket binder, with very high target selectivity as indicated by kinome profiling. It is highly water-soluble, bioavailable, and produces no limiting toxicity upon prolonged administration in mice, at doses that yield plasma concentrations exceeding cellular IC50 by 2-3 orders of magnitude. CDK8/19 inhibition produces chemopotentiating, chemopreventive and anti-metastatic effects in different types of cancer, inhibiting tumor progression by acting both at the tumor cells (the “seed”) and the tumor microenvironment (the “soil”) of cancers.
Senexin B (SNX2-1-165, BCD-115) is a potent, selective, and orally available small-molecule inhibitor of cyclin-dependent kinases 8 and 19 (CDK8/19). It has potential antineoplastic and chemoprotective activities. It is being studied for the treatment of cancer, including triple-negative breast cancer (TNBC).
Biological Activity I Assay Protocols (From Reference)
Targets
Senexin B selectively targets CDK8 and CDK19. It exhibits Kd values of 140 nM for CDK8 and 80 nM for CDK19. Its IC50 values range from 24 to 50 nM. By inhibiting these kinases, it modulates transcriptional regulation and shows anti-cancer activity.
ln Vitro
In vitro, Senexin B is a potent inhibitor of CDK8/19 with IC50 values ranging from 24 to 50 nM. It exhibits Kd values of 140 nM for CDK8 and 80 nM for CDK19. It inhibits cell growth in estrogen-containing media in breast cancer cells (MCF-7, BT474, and T47D-ER/Luc) in a concentration-dependent manner (1.25-5 μM). It strongly reduces the emergence of estrogen-independent cells.
ln Vivo
In vivo, Senexin B significantly slows tumor growth and inhibits tumor progression in triple-negative breast cancer (TNBC) xenograft models. Its oral bioavailability makes it suitable for in vivo studies.
Enzyme Assay
In vitro enzyme assays for Senexin B involve measuring the inhibition of purified CDK8 and CDK19 kinase activity. The enzymes are incubated with a peptide substrate and ATP in the presence of varying concentrations of the compound. The phosphorylation of the substrate is measured using radioactivity or fluorescence-based methods to determine the IC50 or Kd.
Cell Assay
In vitro cellular assays for Senexin B are performed using breast cancer cell lines, such as MCF-7, BT474, and T47D-ER/Luc. Cells are treated with the compound for several days, and cell viability is measured using CellTiter-Glo or MTT assays. The compound's effect on cell cycle progression and apoptosis is also assessed.
Animal Protocol
In vivo animal studies for Senexin B are conducted in mouse xenograft models using triple-negative breast cancer (TNBC) cell lines. Tumor-bearing mice are treated with the compound orally, and tumor growth is measured. The compound's ability to inhibit tumor growth and its effects on CDK8/19 signaling in tumor tissue are assessed.
ADME/Pharmacokinetics
Senexin B is an orally available compound. Its PK properties have been characterized in preclinical species, supporting its use in in vivo efficacy studies. Its oral bioavailability allows for convenient dosing in animal models.
Toxicity/Toxicokinetics
Toxicological data for Senexin B are not detailed in publicly available sources. As an anti-cancer agent in development, its safety profile would be evaluated in standard toxicology studies.
References

[1]. Abstract PR08: Targeting tumor microenvironment with selective small-molecule inhibitors of CDK8/19. Abstracts: AACR Special Conference on Cellular Heterogeneity in the Tumor Microenvironment; 2014 Feb 26-Mar 1; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2015;75(1 Suppl):Abstract nr PR08. doi:10.1158/1538-7445.CHTME14-PR08.

[2]. Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer. Oncotarget. 2017 Feb 21;8(8):12558-12575.

[3]. CDK8-CDK19 selective inhibitors and their use in anti-metastatic and chemopreventative methods for cancer. US 9321737 B2.

Additional Infomation
BCD 115, a cyclin-dependent kinase 8/19 inhibitor, is an orally bioavailable inhibitor of cyclin-dependent kinases 8 and 19 (CDK8/19) with potential antitumor and chemoprotective activities. After oral administration, BCD 115 binds to CDK8/19 and inhibits its activity, thereby preventing the activation of CDK8/19-mediated oncogenic signaling pathways, blocking the selective transcription of certain pro-tumorigenic genes, and inhibiting the proliferation of CDK8/19-overexpressing tumor cells. CDKs are serine/threonine kinases involved in cell cycle regulation and may be overexpressed in some cancer cell types. CDK8 plays a crucial role in transcriptional regulation and is an important oncogenic driver in various cancer cell types.
Senexin B is also known as SNX2-1-165 and BCD-115. It is a potent and selective CDK8/19 inhibitor. It is being developed for the treatment of cancer. It is not an approved drug.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H26N6O
Molecular Weight
450.535
Exact Mass
450.216
CAS #
1449228-40-3
PubChem CID
71661259
Appearance
White to off-white solid powder
LogP
4.1
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
5
Heavy Atom Count
34
Complexity
743
Defined Atom Stereocenter Count
0
SMILES
CN1CCN(C(=O)C2C=C3C=CC(CC/N=C4\NC=NC5=CC=C(C#N)C=C\45)=CC3=CC=2)CC1
InChi Key
VNADJTWHOAMTLY-UHFFFAOYSA-N
InChi Code
InChI=1S/C27H26N6O/c1-32-10-12-33(13-11-32)27(34)23-6-5-21-14-19(2-4-22(21)16-23)8-9-29-26-24-15-20(17-28)3-7-25(24)30-18-31-26/h2-7,14-16,18H,8-13H2,1H3,(H,29,30,31)
Chemical Name
4-[2-[6-(4-methylpiperazine-1-carbonyl)naphthalen-2-yl]ethylamino]quinazoline-6-carbonitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2196 mL 11.0978 mL 22.1956 mL
5 mM 0.4439 mL 2.2196 mL 4.4391 mL
10 mM 0.2220 mL 1.1098 mL 2.2196 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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