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SCY-635

Cat No.:V4233 Purity: ≥98%
SCY-635 is a novel and potent nonimmunosuppressive cyclosporine-based analog that exhibits potent suppression of hepatitis C virus (HCV) replicationin vitro.
SCY-635
SCY-635 Chemical Structure CAS No.: 210759-10-7
Product category: Others 8
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

SCY-635 is a novel and potent nonimmunosuppressive cyclosporine-based analog that exhibits potent suppression of hepatitis C virus (HCV) replication in vitro. SCY-635 inhibited the peptidyl prolyl isomerase activity of cyclophilin A at nanomolar concentrations but showed no detectable inhibition of calcineurin phosphatase activity at concentrations up to 2 μM. Metabolic studies indicated that SCY-635 did not induce the major cytochrome P450 enzymes 1A2, 2B6, and 3A4. SCY-635 was a weak inhibitor and a poor substrate for P-glycoprotein. Functional assays with stimulated Jurkat cells and stimulated human peripheral blood mononuclear cells indicated that SCY-635 is a weaker inhibitor of interleukin-2 secretion than cyclosporine. A series of two-drug combination studies was performed in vitro. SCY-635 exhibited synergistic antiviral activity with alpha interferon 2b and additive antiviral activity with ribavirin. SCY-635 was shown to be orally bioavailable in multiple animal species and produced blood and liver concentrations of parent drug that exceeded the 50% effective dose determined in the bicistronic con1b-derived replicon assay. These results suggest that SCY-635 warrants further investigation as a novel therapeutic agent for the treatment of individuals who are chronically infected with HCV.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
SCY-635, a 3,4-disubstituted nonimmunosuppressive CsA analog that exhibits potent suppression of HCV RNA replication in vitro. SCY-635 is a reversible, nanomolar inhibitor of the PPIase activity expressed by CyPA. SCY-635 is orally bioavailable in multiple species and distributes extensively to hepatocytes. Metabolic studies indicate that the administration of SCY-635 is unlikely to result in adverse pharmacological interactions. Two-drug synergy studies indicate that SCY-635 exhibits additive to synergistic antiviral activity when it is tested in vitro with alpha interferon 2b (IFNα-2b) or ribavirin without increasing cell cytotoxicity. These results are consistent with the recent observation of the potent clinical antiviral activity of SCY-635 (13) and suggest that further clinical studies assessing the safety and antiviral activity of SCY-635 in combination with interferon and ribavirin are warranted.
Cell Assay
Culture medium was supplemented either with 5% fetal bovine serum (FBS) (0% human serum) or with human serum to achieve final concentrations of 10%, 20%, and 40%. Anti-HCV activity (expressed as the 50% effective concentration [EC50]) was assessed by using the luciferase end point following 72 h of incubation with SCY-635 at concentrations ranging from 0.05 to 5 μM.[1]
CsA or SCY-635 was incubated in a 1:1 molar ratio with CyPA in the presence of calcineurin (1.32 nM) and calmodulin (50 nM) at 22°C for 30 min. [1]
CsA, SCY-635, or a control compound (warfarin, imipramine, or carbamezapine) was added to pooled fresh human plasma , and the mixture was incubated at 37°C for 30 min before centrifugation. The amounts of unbound (free) and bound compound in the ultrafiltrate and retentate, respectively, were determined by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Briefly, chromatographic separation was achieved by gradient elution from a Luna C8 3-μm-particle-size HPLC column (50 by 2 mm). The starting gradient conditions were 80:20 water-methanol (5 mM ammonium formate and 0.1% formic acid) for 15 s, followed by a linear gradient to 5:95 water-methanol over 1.75 min and a hold for 1 min. SCY-635 eluted at 2.3 min. [1]
CsA and SCY-635 (1 μM) were incubated with pooled liver microsomes (1.05 mg protein/ml) for 0, 5, 15, and 30 min at 37°C in an oxygen-enriched environment in the presence of NADPH.[1]
CsA and SCY-635 were added to membrane preparations containing recombinant human CYP enzymes at concentrations ranging from 1 to 100 μM, together with luminogenic substrates specific for each enzyme. [1]
SCY-635 was tested at nine concentrations with rIFNα-2b prepared at five concentrations. SCY-635 was serially diluted twofold with concentrations ranging from 0.008 to 2.0 μM. rIFNα-2b was prepared as half-log10 dilutions, producing concentrations of 0.005 to 0.5 IU/ml. SCY-635 was tested at eight concentrations with ribavirin tested at five concentrations. SCY-635 was prepared by the use of twofold dilutions, with the resulting concentrations ranging from 3.91 to 500 nM. [1]
The hepatocytes were seeded in the bottom of a 24-well Costar plate at a density of 2 × 105 cells/well. A Transwell insert plate was carefully added and the NPCs were seeded in each insert at a density of 1 × 105 cells per well. SCY-635 was added at a final concentration of 500 or 3,000 ng/ml. The plates were incubated for 1 h at 37°C in a humidified incubator with 5% CO2. The cells were collected at the end of the incubation. The protein content was measured as described by Lowry . The concentration of SCY-635 in the hepatocytes and nonparenchymal cells was determined by LC-MS/MS. The SCY-635 concentration was expressed as the ng of SCY-635 per μg of protein.[1]
Animal Protocol
The biological distribution of SCY-635 in male Sprague-Dawley rats was assessed following the intravenous injection of 10 mg/kg of body weight and following oral gavage with 10 and 30 mg/kg. [1]
References
2010 Feb;54(2):660-72;2012 Jul;56(7):3888-97;2012 Jul;57(1):47-54.
Additional Infomation
SCY-635 has been investigated for the treatment of Chronic Hepatitis C and Hepatitis C Infection.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C66H120N12O13S
Molecular Weight
1321.8
Exact Mass
1320.88
CAS #
210759-10-7
PubChem CID
6479267
Appearance
Typically exists as solid at room temperature
LogP
3.885
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
15
Rotatable Bond Count
19
Heavy Atom Count
92
Complexity
2530
Defined Atom Stereocenter Count
13
SMILES
C/C=C/C[C@H]([C@@H](O)[C@H]1C(N[C@H](C(N([C@H](SCCN(C)C)C(N([C@H](C(N[C@H](C(N([C@H](C(N[C@H](C(N[C@@H](C(N([C@H](C(N([C@H](C(N([C@H](C(N1C)=O)C(C)C)C)=O)CC(C)C)C)=O)CC(C)C)C)=O)C)=O)C)=O)CC(C)C)C)=O)C(C)C)=O)CC(C)(O)C)C)=O)C)=O)CC)=O)C
InChi Key
AQHMBDAHQGYLIU-XNFHFXFQSA-N
InChi Code
InChI=1S/C66H120N12O13S/c1-27-29-30-42(13)53(79)52-57(83)69-45(28-2)59(85)78(26)65(92-32-31-71(18)19)64(90)75(23)49(36-66(16,17)91)56(82)70-50(40(9)10)62(88)72(20)46(33-37(3)4)55(81)67-43(14)54(80)68-44(15)58(84)73(21)47(34-38(5)6)60(86)74(22)48(35-39(7)8)61(87)76(24)51(41(11)12)63(89)77(52)25/h27,29,37-53,65,79,91H,28,30-36H2,1-26H3,(H,67,81)(H,68,80)(H,69,83)(H,70,82)/b29-27+/t42-,43+,44-,45+,46+,47+,48+,49+,50+,51+,52+,53-,65-/m1/s1
Chemical Name
(3S,6S,9S,12R,15S,18S,21S,24S,27R,30S,33S)-27-[2-(dimethylamino)ethylsulfanyl]-30-ethyl-33-[(E,1R,2R)-1-hydroxy-2-methylhex-4-enyl]-24-(2-hydroxy-2-methylpropyl)-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18-tris(2-methylpropyl)-3,21-di(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.7565 mL 3.7827 mL 7.5654 mL
5 mM 0.1513 mL 0.7565 mL 1.5131 mL
10 mM 0.0757 mL 0.3783 mL 0.7565 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • SCY-635

    SCY-635


    (A) Ten micrograms ofin vitro-transcribed subgenomic Con1 or genomic JFH-1 or RNA was electroporated into Huh7 cells in the presence of increasing concentrations ofSCY-635(0.3125, 0.625, 1.25, and 2.5 μM).2012 Jul;56(7):3888-97.

  • SCY-635

    Huh7-Con1 cells were passaged eight consecutive times without G418 in the presence or absence of two concentrations of CsA,SCY-635, or telaprevir (0.5 and 1 μM).2012 Jul;56(7):3888-97.


    SCY-635

    (A) Same as , except that GST-CypA (1 μg) was mixed with recombinant NS5A-His (200 ng) derived from genotypes 1a, 1b, 2a, and 2b with increasing concentrations ofSCY-635(from 0.3125 to 0.625 μM) for 3 h at 4°C.2012 Jul;56(7):3888-97.

  • SCY-635

    (A) GST-CypA or GST-CypB (1 μg) was mixed with Con1 NS5A-His (200 ng) for 3 h at 4°C in the presence or absence of increasing concentrations ofSCY-635.


    SCY-635

    (A) Same as , except that GST-CypA (1 μg) was mixed with recombinant wild-type or D320E or Y321N mutant NS5A-His (200 ng) with increasing concentrations ofSCY-635(from 0.3125 to 0.625 μM) for 3 h at 4°C.2012 Jul;56(7):3888-97.

  • SCY-635

    SCY-635

    Inhibition of calcineurin phosphatase activity by the binary complex formed between CsA and human CyPA and by the binary complex formed between SCY-635 and human CyPA.2010 Feb;54(2):660-72.

  • SCY-635

    Suppression of HCV replicationin vitro.The anti-HCV activity of SCY-635 was assessed by using the HCV subgenomic replicon system


    SCY-635

    SCY-635 is a weaker inhibitor of IL-2 secretion than CsA.2010 Feb;54(2):660-72.

  • SCY-635

    Inhibition of PPIase activity of CyPA by CsA and by SCY-635.

    SCY-635

    SCY-635 exhibits synergistic antiviral activity when it is used in combination with rIFNα-2b.2010 Feb;54(2):660-72.

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