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SCP1-IN-1

Cat No.:V50723 Purity: ≥98%
SCP1-IN-1 (compound SH T-62) is a potent and specific covalent/irreversible inhibitor of SCP1.
SCP1-IN-1
SCP1-IN-1 Chemical Structure CAS No.: 2764615-55-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
100mg
250mg
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Product Description
SCP1-IN-1 (compound SH T-62) is a potent and specific covalent/irreversible inhibitor of SCP1. SCP1-IN-1 promotes REST degradation and reduces transcriptional activity. High levels of REST protein drive tumor growth in some glioblastoma cells. SCP1-IN-1 may be used for studying glioblastoma whose growth is driven by REST transcriptional activity.
SCP1-IN-1 (compound SH T-62) is a potent and selective covalent inhibitor of the Small C-terminal domain phosphatase 1 (SCP1). SCP1 is a phosphatase that plays a crucial role in regulating the stability of the RE1-Silencing Transcription factor (REST). By inhibiting SCP1, SCP1-IN-1 promotes REST degradation and reduces REST transcriptional activity. This compound holds potential for researching glioblastoma driven by REST transcription activity, as elevated REST protein levels drive tumor growth in certain glioblastoma cells. The CAS number is 2764615-55-4.
Biological Activity I Assay Protocols (From Reference)
Targets
SCP1-IN-1 targets Small C-terminal domain phosphatase 1 (SCP1), an enzyme that dephosphorylates the C-terminal domain of RNA polymerase II, thereby regulating transcriptional elongation and gene expression. It acts as a covalent/irreversible inhibitor of SCP1. The human target IC50 is 10 μM. By inhibiting SCP1, the compound promotes the degradation of the REST transcription factor and reduces its transcriptional activity.
ln Vitro
In vitro, SCP1-IN-1 demonstrates potent and selective inhibition of SCP1 with an IC50 of 10 μM against the human target. It promotes REST degradation and reduces transcriptional activity in cellular models. In certain glioblastoma cells where elevated REST protein levels drive tumor growth, SCP1-IN-1 shows potential for research applications. The compound is a covalent inhibitor, indicating irreversible binding to its target.
ln Vivo
In vivo, SCP1-IN-1 has potential for researching glioblastoma driven by REST transcription activity. However, specific in vivo efficacy data in animal models are not detailed in the available literature. As a research compound, it is being investigated for its ability to reduce tumor growth in REST-dependent cancer models.
Enzyme Assay
The in vitro enzyme inhibition assay for SCP1-IN-1 likely involves measuring the phosphatase activity of SCP1 in the presence of the compound. SCP1 dephosphorylates the C-terminal domain of RNA polymerase II; inhibition is assessed by quantifying the reduction in dephosphorylation activity. The IC50 value of 10 μM against the human target has been reported. As a covalent inhibitor, the assay may include a pre-incubation step to allow for irreversible binding.
Cell Assay
In vitro cell-based assays for SCP1-IN-1 involve treating glioblastoma cells with the compound and measuring REST protein levels and transcriptional activity. REST degradation is assessed via Western blot or immunofluorescence, while transcriptional activity is measured using reporter gene assays or qPCR of REST target genes. The compound’s ability to reduce cell viability in REST-dependent cancer cell lines is also evaluated.
Animal Protocol
In vivo animal studies for SCP1-IN-1 would likely involve xenograft mouse models of glioblastoma. Tumor-bearing mice would be treated with SCP1-IN-1 via oral or intraperitoneal administration, and tumor growth inhibition would be monitored. REST protein levels and transcriptional activity in tumor tissues would be assessed post-treatment to confirm target engagement.
ADME/Pharmacokinetics
Pharmacokinetic properties of SCP1-IN-1 are not extensively detailed in the available literature. The compound is soluble in DMSO (90 mg/mL, 172.91 mM). It has a predicted relative density of 1.496 g/cm³. For storage, the pure form should be kept at -20°C for up to 3 years, and in solvent at -80°C for 1 year.
Toxicity/Toxicokinetics
No specific toxicity data for SCP1-IN-1 are available in the provided literature. As a covalent inhibitor, potential off-target effects and general cytotoxicity would need to be evaluated in preclinical studies. The compound is for research use only and not for human therapeutic applications. Standard laboratory safety precautions should be followed when handling.
Additional Infomation
SCP1-IN-1 is a research tool for studying the role of SCP1 and REST in cancer, particularly glioblastoma. It is a covalent inhibitor that promotes REST degradation and reduces transcriptional activity. The compound is available for research purposes only. Its CAS number is 2764615-55-4. Further studies are needed to fully characterize its in vivo efficacy and pharmacokinetic profile.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H19F3N2O7S2
Molecular Weight
520.50
Exact Mass
520.058
CAS #
2764615-55-4
PubChem CID
163196270
Appearance
White to off-white solid powder
LogP
3
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
10
Heavy Atom Count
34
Complexity
948
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C2C(=C1)C=C(S2(=O)=O)C(=O)NCCOCCNS(=O)(=O)C3=CC=C(C=C3)OC(F)(F)F
InChi Key
LOPHIWMZIIGDGK-UHFFFAOYSA-N
InChi Code
InChI=1S/C20H19F3N2O7S2/c21-20(22,23)32-15-5-7-16(8-6-15)34(29,30)25-10-12-31-11-9-24-19(26)18-13-14-3-1-2-4-17(14)33(18,27)28/h1-8,13,25H,9-12H2,(H,24,26)
Chemical Name
1,1-dioxo-N-[2-[2-[[4-(trifluoromethoxy)phenyl]sulfonylamino]ethoxy]ethyl]-1-benzothiophene-2-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~192.12 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9212 mL 9.6061 mL 19.2123 mL
5 mM 0.3842 mL 1.9212 mL 3.8425 mL
10 mM 0.1921 mL 0.9606 mL 1.9212 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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