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SARS-CoV-2-IN-13

Cat No.:V47271 Purity: ≥98%
SARS-CoV-2-IN-13 (compound 6) is a potent inhibitor of SARS-CoV-2 with IC50 of 0.057 μM.
SARS-CoV-2-IN-13
SARS-CoV-2-IN-13 Chemical Structure CAS No.: 56961-10-5
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
SARS-CoV-2-IN-13 (compound 6) is a potent inhibitor of SARS-CoV-2 with IC50 of 0.057 μM. SARS-CoV-2-IN-13 is a niclosamide analog. SARS-CoV-2-IN-13 is more stable than niclosamide in human plasma and liver S9 enzyme assays, and oral gavage improves bioavailability and half-life.
SARS-CoV-2-IN-13 (CAS 56961-10-5, compound 5/6) is a potent inhibitor of SARS-CoV-2, the virus responsible for COVID-19. It is a niclosamide analogue with a molecular formula of C13H8Cl2N2O4 and a molecular weight of 327.12. The compound has an IC50 of 0.057 μM against SARS-CoV-2. It demonstrates greater stability in human plasma and liver S9 enzyme assays compared to niclosamide, which can improve bioavailability and half-life when administered orally.
Biological Activity I Assay Protocols (From Reference)
Targets
SARS-CoV-2-IN-13 targets SARS-CoV-2, the causative agent of COVID-19. As a niclosamide analogue, it likely inhibits viral replication by targeting viral entry or replication mechanisms. Niclosamide has been shown to inhibit SARS-CoV-2 by blocking viral entry and disrupting endosomal acidification. The compound has an IC50 of 0.057 μM against SARS-CoV-2. Its improved stability compared to niclosamide suggests a more favorable pharmacokinetic profile for oral administration.
ln Vitro
In vitro, SARS-CoV-2-IN-13 is a potent inhibitor of SARS-CoV-2 with an IC50 of 0.057 μM. It shows greater stability in human plasma and liver S9 enzyme assays than niclosamide, indicating improved metabolic stability. The compound demonstrates significant antiviral activity, cytotoxicity, metabolic stability, and permeability across various assays. As a niclosamide analogue, it is expected to inhibit viral entry and replication.
ln Vivo
In vivo, SARS-CoV-2-IN-13 is expected to show improved bioavailability and half-life when administered orally compared to niclosamide, due to its greater stability in plasma and liver S9 fractions. However, specific in vivo efficacy data in animal models of SARS-CoV-2 infection are not extensively reported in the available literature. The compound is a promising candidate for further development as an oral antiviral agent.
Enzyme Assay
In vitro enzyme/receptor binding assays for SARS-CoV-2-IN-13 typically involve antiviral activity assays using Vero E6 cells infected with SARS-CoV-2. Cells are cultured in DMEM with 2% FBS and treated with various concentrations of the compound (typically 0.001-10 μM) for 48-72 hours. Viral replication is quantified by plaque assay or qRT-PCR for viral RNA. The IC50 is determined from dose-response curves. Cytotoxicity is assessed in parallel using MTT assays. Metabolic stability is evaluated in human plasma and liver S9 fractions.
Cell Assay
In vitro cellular assays for SARS-CoV-2-IN-13 use Vero E6 cells or Calu-3 human lung epithelial cells infected with SARS-CoV-2. Cells are cultured in DMEM with 2% FBS and treated with various concentrations of the compound (typically 0.001-10 μM) for 48-72 hours post-infection. Viral RNA is quantified by RT-qPCR. Viral titers are determined by plaque assay or TCID50. Cytotoxicity is assessed using CellTiter-Glo or MTT assays. Permeability is assessed using Caco-2 or MDCK cell monolayers.
Animal Protocol
In vivo animal studies with SARS-CoV-2-IN-13 would typically use mouse models of SARS-CoV-2 infection (e.g., K18-hACE2 transgenic mice). Mice are infected intranasally with SARS-CoV-2 and treated with the compound orally at doses of 1-50 mg/kg, once or twice daily for 3-7 days. Viral load in lungs and other tissues is measured by qRT-PCR. Lung histopathology, cytokine levels, and survival are assessed. However, specific in vivo data for this compound are not extensively reported.
ADME/Pharmacokinetics
Pharmacokinetic properties of SARS-CoV-2-IN-13: The compound shows greater stability in human plasma and liver S9 enzyme assays than niclosamide, which can improve oral bioavailability and half-life. Specific PK parameters such as Cmax, Tmax, AUC, and bioavailability are not extensively reported. The compound has a molecular weight of 327.12. It is expected to be metabolized by hepatic enzymes and excreted in bile and urine.
Toxicity/Toxicokinetics
The toxicity profile of SARS-CoV-2-IN-13 is not extensively reported in the available literature. As a niclosamide analogue, it may have a similar safety profile to niclosamide, which is an FDA-approved anti-helminthic drug with a well-established safety profile. The compound is for research use only and not for human therapeutic use. Standard toxicity studies would include cytotoxicity assays in normal cell lines and acute toxicity in rodents.
References

[1]. Design, synthesis and biological evaluations of niclosamide analogues against SARS-CoV-2. Eur J Med Chem. 2022 May 5;235:114295.

Additional Infomation
SARS-CoV-2-IN-13 (CAS 56961-10-5, compound 5/6) is a potent inhibitor of SARS-CoV-2 with an IC50 of 0.057 μM. It is a niclosamide analogue that demonstrates greater stability in human plasma and liver S9 enzyme assays, potentially improving oral bioavailability and half-life. The compound is a promising candidate for research on COVID-19 therapeutics and is available for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H8CL2N2O4
Molecular Weight
327.119621276855
Exact Mass
325.986
CAS #
56961-10-5
PubChem CID
19027407
Appearance
Light yellow to brown solid powder
LogP
4
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
2
Heavy Atom Count
21
Complexity
404
Defined Atom Stereocenter Count
0
SMILES
N(C1C=CC(N(=O)=O)=C(Cl)C=1)C(C1C=C(Cl)C=CC=1O)=O
InChi Key
FKLGWJUBUPDJJI-UHFFFAOYSA-N
InChi Code
InChI=1S/C13H8Cl2N2O4/c14-7-1-4-12(18)9(5-7)13(19)16-8-2-3-11(17(20)21)10(15)6-8/h1-6,18H,(H,16,19)
Chemical Name
5-chloro-N-(3-chloro-4-nitrophenyl)-2-hydroxybenzamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ≥ 125 mg/mL (~382.12 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0570 mL 15.2849 mL 30.5698 mL
5 mM 0.6114 mL 3.0570 mL 6.1140 mL
10 mM 0.3057 mL 1.5285 mL 3.0570 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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