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S6K1-IN-1

Cat No.:V47149 Purity: ≥98%
S6K-18 is a potent and specific inhibitor of p70S6K1 with IC50 of 52 nM.
S6K1-IN-1
S6K1-IN-1 Chemical Structure CAS No.: 1265789-88-5
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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5mg
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Product Description
S6K-18 is a potent and specific inhibitor of p70S6K1 with IC50 of 52 nM.
S6K1-IN-1 (CAS 1265789-88-5, also known as S6K-18) is a potent and selective inhibitor of p70S6K1 (ribosomal protein S6 kinase beta-1). It has a molecular formula of C17H18N4O3S and a molecular weight of 358.41. S6K1 is a key downstream effector in the mTOR (mechanistic target of rapamycin) signaling pathway, playing a critical role in the regulation of cell growth, proliferation, and protein synthesis. This compound is primarily used in cancer research to study the mTOR/S6K1 signaling axis and its role in tumorigenesis.
Biological Activity I Assay Protocols (From Reference)
Targets
S6K1-IN-1 targets p70S6K1 (ribosomal protein S6 kinase beta-1), a serine/threonine protein kinase that is a downstream effector of the mTORC1 complex. S6K1 phosphorylates the ribosomal protein S6 and other substrates involved in protein synthesis, cell growth, and metabolism. The compound is a selective inhibitor with an IC50 of 52 nM. It does not significantly inhibit other related kinases in the AGC family, making it a valuable tool for studying S6K1-specific functions in the mTOR pathway.
ln Vitro
In vitro, S6K1-IN-1 demonstrates potent inhibition of p70S6K1 with an IC50 of 52 nM. It shows selectivity for S6K1 over other kinases, making it a useful tool for dissecting S6K1-specific signaling events. The compound inhibits S6K1 activity in cell-based assays, reducing phosphorylation of downstream substrates such as ribosomal protein S6. In cancer cell lines, S6K1-IN-1 inhibits cell proliferation and induces apoptosis by blocking mTORC1-mediated survival signals. Detailed IC50 values against specific cancer cell lines are not extensively reported in the available literature.
ln Vivo
In vivo, S6K1-IN-1 is expected to inhibit S6K1 activity and suppress mTORC1 signaling in animal models. As a tool compound for cancer research, it may be used in xenograft mouse models to assess the anti-tumor efficacy of S6K1 inhibition. The compound would be administered orally or intraperitoneally, and tumor growth inhibition, S6K1 phosphorylation status, and downstream signaling markers would be evaluated. However, specific in vivo efficacy data for this compound are not extensively reported in the available literature.
Enzyme Assay
In vitro enzyme/receptor binding assays for S6K1-IN-1 typically involve kinase activity assays using purified recombinant p70S6K1 enzyme. The assay is performed in 96-well plates with kinase buffer (25 mM HEPES pH 7.5, 10 mM MgCl2, 1 mM DTT, 0.01% Triton X-100). The compound is incubated with the enzyme, ATP (10 μM), and a peptide substrate (e.g., S6 ribosomal protein-derived peptide) at 30°C for 60 minutes. Phosphorylated substrate is detected using a specific antibody in an ELISA or TR-FRET format. The IC50 is determined from dose-response curves (typically 0.1 nM to 10 μM).
Cell Assay
In vitro cellular assays for S6K1-IN-1 use cancer cell lines such as HEK293, HeLa, or various cancer cells that express S6K1. Cells are cultured in DMEM with 10% FBS and treated with various concentrations of the compound (typically 0.01-10 μM) for 4-24 hours. S6K1 activity is assessed by Western blotting for phosphorylated S6K1 (Thr389) and its downstream substrate phosphorylated ribosomal protein S6 (Ser235/236). Cell proliferation is measured using MTT or BrdU incorporation assays after 48-72 hours of treatment. Apoptosis is assessed by caspase-3/7 activity or Annexin V staining.
Animal Protocol
In vivo animal studies with S6K1-IN-1 typically use mouse xenograft models of cancer. Nude mice are implanted subcutaneously with cancer cells (e.g., breast, prostate, or lung cancer cells). When tumors reach approximately 100-200 mm3, mice are randomized and treated with the compound at doses of 10-50 mg/kg administered orally or intraperitoneally, daily or every other day for 2-4 weeks. Tumor volume is measured every 2-3 days using calipers. At study termination, tumors are harvested for analysis of S6K1 phosphorylation, Ki67 proliferation index, and apoptosis markers (cleaved caspase-3).
ADME/Pharmacokinetics
Pharmacokinetic properties of S6K1-IN-1: The compound is a small molecule with a molecular weight of 358.41 and is expected to have moderate oral bioavailability. It is soluble in DMSO and other organic solvents. The compound is typically formulated in PEG400 or carboxymethylcellulose for in vivo administration. Metabolic stability is likely moderate due to the presence of heterocyclic rings. The compound is expected to be metabolized by hepatic CYP450 enzymes. The elimination half-life and volume of distribution are not extensively reported in the available literature. Tissue distribution is expected to be widespread due to its lipophilic nature.
Toxicity/Toxicokinetics
The toxicity profile of S6K1-IN-1 is not extensively reported in the available literature. As a kinase inhibitor, it may have off-target effects at higher concentrations. The compound is for research use only and not for human therapeutic use. Standard toxicity studies would include assessment of cytotoxicity in normal cell lines (e.g., HEK293, NIH3T3) using MTT assays. Acute toxicity in rodents would involve single-dose administration with monitoring of body weight, clinical signs, and histopathology. No specific genotoxicity, cardiotoxicity (hERG), or hepatotoxicity data are reported.
References

[1]. Potent and selective thiophene urea-templated inhibitors of S6K. Bioorg Med Chem Lett. 2011 Jan 15;21(2):849-52.

Additional Infomation
S6K1-IN-1 (S6K-18) is a potent and selective p70S6K1 inhibitor with an IC50 of 52 nM. It is a valuable research tool for studying the mTOR/S6K1 signaling pathway, which is frequently dysregulated in cancer, diabetes, and aging. The compound is used in cell biology and cancer research to investigate the role of S6K1 in cell growth, proliferation, metabolism, and autophagy. It has potential applications in studying mTOR inhibitor resistance mechanisms. The compound is not approved for clinical use and is available for research purposes only. Its selectivity and potency make it a useful alternative to rapamycin for dissecting mTORC1-S6K1-specific effects.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H18N4O3S
Molecular Weight
358.4148
Exact Mass
358.109
CAS #
1265789-88-5
PubChem CID
53317853
Appearance
Off-white to pink solid powder
Density
1.5±0.1 g/cm3
Boiling Point
494.9±45.0 °C at 760 mmHg
Flash Point
253.1±28.7 °C
Vapour Pressure
0.0±1.3 mmHg at 25°C
Index of Refraction
1.746
LogP
5.22
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
25
Complexity
525
Defined Atom Stereocenter Count
0
SMILES
CC(C)(C)C1=CC(=C(S1)NC(=O)NC2=CC3=C(C=C2)NN=C3)C(=O)O
InChi Key
BSRFCMMJUFQEOX-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H18N4O3S/c1-17(2,3)13-7-11(15(22)23)14(25-13)20-16(24)19-10-4-5-12-9(6-10)8-18-21-12/h4-8H,1-3H3,(H,18,21)(H,22,23)(H2,19,20,24)
Chemical Name
5-tert-butyl-2-(1H-indazol-5-ylcarbamoylamino)thiophene-3-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~348.76 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7901 mL 13.9505 mL 27.9010 mL
5 mM 0.5580 mL 2.7901 mL 5.5802 mL
10 mM 0.2790 mL 1.3951 mL 2.7901 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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